View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_9 (Length: 335)
Name: NF21068_high_9
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 275
Target Start/End: Original strand, 9870998 - 9871149
Alignment:
| Q |
119 |
aacattataagtataaacaataactccaaggtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcatac |
218 |
Q |
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| T |
9870998 |
aacattataagtataaacaataattccaaggtcaaatttatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggtatag |
9871097 |
T |
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| Q |
219 |
caaaaataattttcctttagaaaaaagagttcaagtctaagaagctttgacaagtga |
275 |
Q |
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| T |
9871098 |
aaaaaaaaa-----aattaaagaaaagagttcaagtctaagaagctttgacaagtga |
9871149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 9876561 - 9876642
Alignment:
| Q |
143 |
tccaaggtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaa |
224 |
Q |
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|||||||||||||||||| |||| | || |||||||||||||||| |||||| | |||||||||||||| ||||||||||| |
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| T |
9876561 |
tccaaggtcaaatatatacgtcaccttctatagtttaaagggaaacgttgatatatcacaagagttatcgacataccaaaaa |
9876642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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