View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21068_low_13 (Length: 304)
Name: NF21068_low_13
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 48527074 - 48526791
Alignment:
| Q |
1 |
aaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggggacccagaggaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527074 |
aaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttctagaagaaacaaattatatgttgaggtaggggacccagaggaagat |
48526975 |
T |
|
| Q |
101 |
catcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattgcttctgaaacggctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48526974 |
catcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacctggtagtgagattgcttctgaaacggctg |
48526875 |
T |
|
| Q |
201 |
cagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48526874 |
cagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
48526791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 7222459 - 7222175
Alignment:
| Q |
1 |
aaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggggacccagaggaagat |
100 |
Q |
| |
|
|||||||||| |||| || | |||||| || ||||||||| | ||| |||||| |||||| | ||||||||| |||||||||||||||| || ||| |
|
|
| T |
7222459 |
aaatattcaaaatgccattagatggggtactgattattttctgaaaactagttcccaaagaaatagattatatgtagaggtaggggacccagttgatgat |
7222360 |
T |
|
| Q |
101 |
catcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattgcttctgaaacggctg |
200 |
Q |
| |
|
|| ||||||||||| ||||| ||||| ||||||||||| ||| | |||||| | ||||||||||||||||| || | ||||||||| ||||||| ||| |
|
|
| T |
7222359 |
caccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggcactgagattgcagctgaaacttctg |
7222260 |
T |
|
| Q |
201 |
cagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtatg |
285 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
7222259 |
ctgctatggctgcttcttccattgtttttaggcatgttgatcccaaatattctcgccgtctcctcaataaagcaaaattggtatg |
7222175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 278
Target Start/End: Original strand, 50305342 - 50305553
Alignment:
| Q |
67 |
attatatgttgaggtaggggacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaac |
166 |
Q |
| |
|
|||||||||| |||||||||||| || || ||||| | ||||||||| |||||||||| ||||||||||| ||| | |||| | ||||| |||||| |
|
|
| T |
50305342 |
attatatgttaaggtaggggaccgagttgatgatcaccgttgttgggcaccaccagaaagtatgaagacaaagagaacatataaattaattgacagtaac |
50305441 |
T |
|
| Q |
167 |
acacccggtagtgagattgcttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctca |
266 |
Q |
| |
|
||||||||| | ||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
50305442 |
acacccggttttaagattgcagctgaaacttctgctgttatggctacttcttccattgtttttagacatgttgatcgtaaatatgctcgtcatctcctta |
50305541 |
T |
|
| Q |
267 |
acaaagcaaaat |
278 |
Q |
| |
|
| |||||||||| |
|
|
| T |
50305542 |
ataaagcaaaat |
50305553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University