View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_14 (Length: 290)
Name: NF21068_low_14
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 4257414 - 4257675
Alignment:
| Q |
18 |
aaatctaagttcggagttagaccataatccacatttagctaatataacaagaattttaggcatgagttatgatgacttgccacattatttgaagtcatgc |
117 |
Q |
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| T |
4257414 |
aaatctaagttcggagttagaccgtaatccacatttagctaatataacaagaattttaggcatgagttatgatgacttgccacattatttgaagtcatgt |
4257513 |
T |
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| Q |
118 |
gtcttgtattttggtatatacccagaagattactcaattcggagttcaaggttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaa |
217 |
Q |
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| T |
4257514 |
gtcttgtattttggtatatacccagaagattactcaattcggagttcaaggttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaa |
4257613 |
T |
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| Q |
218 |
aatctttggaggaagttggagaggaatatttgacagagttgatccacagaagtttggttcat |
279 |
Q |
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| T |
4257614 |
aatctttggaggaagttggagaggaatatttgacagagttgatccacagaagtttggttcat |
4257675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 22620542 - 22620436
Alignment:
| Q |
169 |
ttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggaggaagttggagaggaatatttgacagagttgatccacagaa |
268 |
Q |
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|||||||||||||||||||| || |||||||| ||| | ||| ||| || ||||||| ||||||| ||| | ||| || |||||||||||||| |||| |
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| T |
22620542 |
ttgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaa |
22620443 |
T |
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| Q |
269 |
gtttggt |
275 |
Q |
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||||||| |
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| T |
22620442 |
gtttggt |
22620436 |
T |
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