View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21068_low_16 (Length: 278)
Name: NF21068_low_16
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_16 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 36150871 - 36151139
Alignment:
| Q |
10 |
catcatcacccttaccatcaacaacagcatcaacaccattgccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150871 |
catcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
36150970 |
T |
|
| Q |
110 |
aacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150971 |
aacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
36151070 |
T |
|
| Q |
210 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactctcagctggtatcatcgccatcaggt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36151071 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggt |
36151139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36154263 - 36154525
Alignment:
| Q |
16 |
cacccttaccatcaacaacagcatcaacaccattgccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
36154263 |
cacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaacaacacc |
36154362 |
T |
|
| Q |
116 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154363 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
36154462 |
T |
|
| Q |
216 |
cttctcaaaacaacacaattaatcaatcaactcaactctcagctggtatcatcgccatcaggt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36154463 |
cttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggt |
36154525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 5273544 - 5273613
Alignment:
| Q |
184 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactc |
253 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactc |
5273613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University