View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_19 (Length: 255)
Name: NF21068_low_19
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 5354397 - 5354162
Alignment:
| Q |
9 |
gaggaaattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354397 |
gaggaaattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggta |
5354298 |
T |
|
| Q |
109 |
cactactgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccacc |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5354297 |
cactactgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgacctcggagcttgtttccacc |
5354198 |
T |
|
| Q |
209 |
aaaattcaacatcttgagactactactctgtgctgc |
244 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
5354197 |
aaaattcaacatcttgagactactactcagtgctgc |
5354162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 5346669 - 5346875
Alignment:
| Q |
14 |
aattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacacta |
113 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||| || ||||||||||||||| | ||| | |||||| || |||||||||||||||||||||| | | |
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| T |
5346669 |
aattttactcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaatgattttggtatagga |
5346768 |
T |
|
| Q |
114 |
ctgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaat |
213 |
Q |
| |
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| ||||| ||||||||||||||| ||||| ||||||||||||| | || |||||||| || ||||||||||| |||| |||||||||||||| |||| |
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| T |
5346769 |
cctcctaaatgattgtcatttagatccaaaaaccttagtgcacataaatttggaaacatactactaggaatatgacctcgaagcttgtttccaccgaaat |
5346868 |
T |
|
| Q |
214 |
tcaacat |
220 |
Q |
| |
|
||||||| |
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|
| T |
5346869 |
tcaacat |
5346875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 5378737 - 5378531
Alignment:
| Q |
14 |
aattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacacta |
113 |
Q |
| |
|
|||||| ||||||||| |||||||| | |||||||||| ||||||||||||||||| |||| |||||| || || |||||||| |||||||||| | | |
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| T |
5378737 |
aattttactcaaaaaatatggaaatctgccggttaatgcattctttccaaggttaataacttgtagttccttacagttgaccaaggattttggtatagga |
5378638 |
T |
|
| Q |
114 |
ctgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaat |
213 |
Q |
| |
|
| ||||||||||||||||||||| ||||| ||||||||||||||| || |||| ||| || ||||||||||| |||| ||||||||||||||||||| |
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|
| T |
5378637 |
cctcctaaaagattgtcatttagatccaaaaaccttagtgcacatgaatttggaaaaatactactaggaatatgacctcgaagcttgtttccaccaaaat |
5378538 |
T |
|
| Q |
214 |
tcaacat |
220 |
Q |
| |
|
| ||||| |
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|
| T |
5378537 |
ttaacat |
5378531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 5401397 - 5401236
Alignment:
| Q |
12 |
gaaattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacac |
111 |
Q |
| |
|
||||||||||||| ||||||||||||| | || ||||||| |||| ||||| |||||| ||||| ||||| || ||||||||||| |||||||||| | |
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| T |
5401397 |
gaaattttgctcagaaaacatggaaatctgcccgttaatgcattcattccagggttaaagacttgaagttccttacaattgaccaaggattttggtatag |
5401298 |
T |
|
| Q |
112 |
tactgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacata |
173 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||| ||||||||||||||| || ||||||||| |
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|
| T |
5401297 |
gaccttctgaaagattgtcatttagatccaaaatccttagtgcacatgaattttgaaacata |
5401236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 5424001 - 5424194
Alignment:
| Q |
26 |
aaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacactactgtctaaaaga |
125 |
Q |
| |
|
||||||||||||| | || ||||||| ||||||||||||||| | ||||| |||||| || ||||||| ||| |||||||||| | || |||||||| |
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|
| T |
5424001 |
aaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggattttggtataggacctcctaaaaga |
5424100 |
T |
|
| Q |
126 |
ttgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaattcaaca |
219 |
Q |
| |
|
||||||||||||| | || ||||||||| ||| | || |||||||| || ||||||| ||| ||||||||||||||||||| |||||||||| |
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|
| T |
5424101 |
ttgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcggagcttgtttccaccgaaattcaaca |
5424194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 5502212 - 5502036
Alignment:
| Q |
60 |
ccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacactactgtctaaaagattgtcatttagattcaaaagccttagtgcacatg |
159 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||| |||||||||| ||||| || || |||||||||||||||| |||| ||||||||||||| |
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|
| T |
5502212 |
ccaaggtttaggacttgtagtttcttgcaattgaccaaagattttggtatactaccatccaagagattgtcatttagatccaaatatcttagtgcacatg |
5502113 |
T |
|
| Q |
160 |
agttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaattcaacatcttgagactactactc |
236 |
Q |
| |
|
| || | | || ||| ||| ||||| |||| |||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
5502112 |
aatttggggatattgtatcagggatatgccctcgaagcttgtttccaccaagattcaacatcctgagactactactc |
5502036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 5363239 - 5363032
Alignment:
| Q |
14 |
aattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacacta |
113 |
Q |
| |
|
|||||| ||||| |||||||||| | |||| |||| || ||| ||||| | |||| ||||| |||||| ||||| || | |||||||||| | | |
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|
| T |
5363239 |
aattttactcaagaaacatggaattcttccagttagtgcattatttccgatgttatcgacttgtagttcccgacaatttactatggattttggtatagtg |
5363140 |
T |
|
| Q |
114 |
ctgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaat |
213 |
Q |
| |
|
| ||||||| ||||||||||||||| |||| ||| ||||||||||| || |||||||||| ||||||||||| || |||| || ||||||| ||||| |
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|
| T |
5363139 |
ccgtctaaatgattgtcatttagatcgaaaatcctcagtgcacatgaatttagaaacatagttttaggaatatgaccttggagtttatttccacgaaaat |
5363040 |
T |
|
| Q |
214 |
tcaacatc |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
5363039 |
tcaacatc |
5363032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 5412507 - 5412297
Alignment:
| Q |
11 |
ggaaattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtaca |
110 |
Q |
| |
|
|||||| ||||| || |||||||||||| | | |||| |||| ||||||||||| | ||||| |||| |||||||||||||| |||||||||| |
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|
| T |
5412507 |
ggaaatattgcttaagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaagacttgaagtttattgcaattgaccaaagattttggtatg |
5412408 |
T |
|
| Q |
111 |
ctactgtctaaaagattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaa |
210 |
Q |
| |
|
|||| ||| || | ||||||||||||||||||| || ||||||||||| || || | |||||| ||| |||||| | | |||||||| || |||| |
|
|
| T |
5412407 |
ctaccgtccaataaattgtcatttagattcaaatatctcagtgcacatgaatttggagatatagtatcagggatatgaccatgaagcttgttacctccaa |
5412308 |
T |
|
| Q |
211 |
aattcaacatc |
221 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5412307 |
agttcaacatc |
5412297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 5393058 - 5392909
Alignment:
| Q |
11 |
ggaaattttgctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtaca |
110 |
Q |
| |
|
|||||| ||||| || |||||||||||| | | |||| |||| ||||||||||| ||||||| |||| |||||||||||||| ||||| |||| |
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|
| T |
5393058 |
ggaaatattgcttaagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaggacttgcagtttattgcaattgaccaaagatttgggtatg |
5392959 |
T |
|
| Q |
111 |
ctactgtctaaaagattgtcatttagattcaaaagccttagtgcacatga |
160 |
Q |
| |
|
|||| || || ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5392958 |
ctaccgttcaatagattgtcattcagattcaaatatcttagtgcacatga |
5392909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 20328901 - 20328708
Alignment:
| Q |
26 |
aaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacactactgtctaaaaga |
125 |
Q |
| |
|
||||||||||||| | || ||||||| ||||||| ||||||| | ||||| |||||| || ||||||| ||| ||| |||||| | || |||||||| |
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|
| T |
20328901 |
aaaacatggaaatctgcctgttaatgcattcttttcaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaaga |
20328802 |
T |
|
| Q |
126 |
ttgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgatctcggagcttgtttccaccaaaattcaaca |
219 |
Q |
| |
|
||||||||||||| | || ||||||||| ||| | || |||||||| || ||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
20328801 |
ttgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaaca |
20328708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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