View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21068_low_2 (Length: 699)
Name: NF21068_low_2
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 684
Target Start/End: Original strand, 5509951 - 5510626
Alignment:
| Q |
13 |
atgatgattataatacaatagaggaagtgatttctaattcaaatgtatcaattgttaatcgaagaagcgtgactgaactcgacccaagagaaggtgctgt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5509951 |
atgatgattataatacaatagaggaagtgatttctaattcacatgtatcaattgttaatcgaagaagcgtgactgaacttgacccaagagaaggtgctgt |
5510050 |
T |
|
| Q |
113 |
aggatttgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5510051 |
aggatttgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagc |
5510150 |
T |
|
| Q |
213 |
cttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaaggtggctattatttaattactgaatttattacnnnnnnnnnnnnn |
312 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5510151 |
cttcctcttgatgaccttgaagtggccgtgattaccgttggtgaagaagaggtaaggtggctattatttaattactgaatttattacttttttctgtttt |
5510250 |
T |
|
| Q |
313 |
nnnaacctcttgtattccctttacttgtggtgtaggctttgagcttccttcaagcattcttcacatcaaaatttaccctgactagtggac----ttggaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || || || |
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| T |
5510251 |
tttaacctcttgtattccctttacttgtggtgtaggctaagagcttccttcaagcattattcacatcaaaatttaccctgactagtgtacttaattagac |
5510350 |
T |
|
| Q |
409 |
attttttaccagacactttttaccggttttgacatcaaagcaaaaacaaactagttggttgatttaatgatctttcaaatgagccagaattatcaagtag |
508 |
Q |
| |
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||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
5510351 |
gttttttatcagaccctttttactggttttgacatcaaagcaaaaacaaactagttggttgatttaatgatctttcaaatgagccagaattaccaagcag |
5510450 |
T |
|
| Q |
509 |
ttgtagtttcggcttgtgttttgaataatatctagaaatcctggaccttggtttgtcatatcacaaaattgtggttttcctttctgttacttaattggat |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5510451 |
ttgtagtttcggcttgtgttttgaataatatctagaaatcctggaccttggtttgtaatatcactaaattgtggttttcctttctgttacttaattggat |
5510550 |
T |
|
| Q |
609 |
tatggcttttctatttagtttttctgttccatgaattctagttctgttactttatagtccagtcatgaagttgtat |
684 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||| ||||| |||||| |
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| T |
5510551 |
tctggtttttctatttagtttttctgttccatgaatttttgttcatttactttatagtctagtaatgaaattgtat |
5510626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 5489429 - 5489594
Alignment:
| Q |
114 |
ggatttgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagcc |
213 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||||||||||| | |||||||||||| ||||||||||||| ||||||||| |||||| |||||||| |
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| T |
5489429 |
ggatttgtgaagagagcaacattatatggtataggagatgatctaaatgtaaaaccactttctgctaattctttgctttcatatttgaaagtattaagcc |
5489528 |
T |
|
| Q |
214 |
ttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaaggtggctattattta |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||| |
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| T |
5489529 |
ttcctcttgatgatcttgaagtgaaggtg---agcattggtgaagctgaggtaatgtggctatcattta |
5489594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 5981219 - 5981058
Alignment:
| Q |
119 |
tgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagccttcct |
218 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||| ||||||||| |||||||||| ||| |||| |
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| T |
5981219 |
tgtgaagagaccagcattatatgttgtaggagatgatctaaaagtaaaatcactttctgctaattcttggctttcatatttgaaagaattgagctttccc |
5981120 |
T |
|
| Q |
219 |
cttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaaggtggctattatt |
280 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||| |||||||| |||||||||||| |
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|
| T |
5981119 |
cttgatgatcttgaagtgaaggtgataagcattggtgaagctgaggtaaagtggctattatt |
5981058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 97 - 409
Target Start/End: Complemental strand, 5446333 - 5446022
Alignment:
| Q |
97 |
caagagaaggtgctgtaggatttgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcata |
196 |
Q |
| |
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|||| ||||||| ||| ||||||||| | ||| |||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||| |||| ||| |
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| T |
5446333 |
caagggaaggtgttgtgggatttgtgcaaagactagcattatatggtgtaggagatgatctaaaagtaaaatcactttctgctaattctttccttttata |
5446234 |
T |
|
| Q |
197 |
tctgaaagaattaagccttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaaggtggctattatttaattactgaatttat |
296 |
Q |
| |
|
| |||||||||||||||| || |||| |||||| ||||| ||||| | ||||||||||| |||||||| ||| |||||||| |||| |||||||| |
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|
| T |
5446233 |
tttgaaagaattaagcctccccattgaagatcttcaagtggaggtgataagcattggtgaagccgaggtaagttggatattattttattagtgaattta- |
5446135 |
T |
|
| Q |
297 |
tacnnnnnnnnnnnnnnnnaacctcttgtattccctttacttgtggtgtaggctttgagcttccttcaagcattcttcacatcaaaatttaccctgacta |
396 |
Q |
| |
|
|| |||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||| ||| |||| |||||| |||||| |
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| T |
5446134 |
taatttttttcgtttttataacctctttgattccttttacttgttgtgtaggctttgagcttccttaaagcattcttgacagcaaagtttaccttgacta |
5446035 |
T |
|
| Q |
397 |
gtggacttggaaa |
409 |
Q |
| |
|
||||||| ||||| |
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|
| T |
5446034 |
gtggactgggaaa |
5446022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 5435629 - 5435516
Alignment:
| Q |
161 |
agtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagccttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagat |
260 |
Q |
| |
|
||||||||||||| || |||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| | |
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|
| T |
5435629 |
agtaaaaccactttctactaattctttccttttatatttgaaagaattaagtcttcctcttgatgatcttgaagtgaaggtgataagcattggtgaagct |
5435530 |
T |
|
| Q |
261 |
gaggtaaggtggct |
274 |
Q |
| |
|
||||||| |||||| |
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|
| T |
5435529 |
gaggtaatgtggct |
5435516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 5996147 - 5995981
Alignment:
| Q |
114 |
ggatttgtgaagagagcagcattttat-gtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagc |
212 |
Q |
| |
|
||||||||||||||| | ||||| ||| |||| ||||||||||||| |||||||||| || |||||||||||| ||||||||| |||||||||| ||| |
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| T |
5996147 |
ggatttgtgaagagaccggcattatatagtgt-aggagatgatctaaaagtaaaacctttttctgctaattcttgcctttcatatttgaaagaattgagc |
5996049 |
T |
|
| Q |
213 |
cttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaaggtggctattatt |
280 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| | ||||||||||| |||||||| ||| ||| |||| |
|
|
| T |
5996048 |
tttccccttgttgatcttgaagtgaatgtgataagcattggtgaagctgaggtaaagtgactactatt |
5995981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 114 - 267
Target Start/End: Complemental strand, 5457562 - 5457409
Alignment:
| Q |
114 |
ggatttgtgaagagagcagcattttatgtgt-taggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctgaaagaattaagc |
212 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| ||| | |||||||| |||||||||||| | ||||||||||||| |||| || | |||||||||||||| |
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|
| T |
5457562 |
ggatttgtaaagagagcagcattatat-tgtgtagaaaatgatctaaaagtaaaaccacattctgctaattctttccttttatgtttgaaagaattaagc |
5457464 |
T |
|
| Q |
213 |
cttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaa |
267 |
Q |
| |
|
||| ||||||| |||||||||| || ||||| | ||||||||||| |||||||| |
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|
| T |
5457463 |
ctttctcttgacgatcttgaagcgaatgtgataagcattggtgaagctgaggtaa |
5457409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 5489630 - 5489708
Alignment:
| Q |
326 |
attccctttacttgtggtgtaggctttgagcttccttcaagcattcttcacatcaaaatttaccctgactagtggactt |
404 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |
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|
| T |
5489630 |
attccctttaattgtggtgtaggctttgagcttccttggagcattcttgacatcaagatttaccttgactagtggactt |
5489708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 267
Target Start/End: Original strand, 5632269 - 5632435
Alignment:
| Q |
101 |
agaaggtgctgtaggatttgtgaagagagcagcattttatgtgttaggagatgatctagaagtaaaaccacttgctgctaattcttttctttcatatctg |
200 |
Q |
| |
|
|||||||| | | ||||||||||||| ||| |||| |||| | |||||||||||| ||||||||||||| ||| || ||||| |||||||| || |
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|
| T |
5632269 |
agaaggtgttatgggatttgtgaagaatgcaacattatatgctattggagatgatctaacagtaaaaccactttctggtagttcttgcatttcatatttg |
5632368 |
T |
|
| Q |
201 |
aaagaattaagccttcctcttgatgatcttgaagtgaccgtgattaccattggtgaagatgaggtaa |
267 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||| ||||| | ||| ||||||| |||||||| |
|
|
| T |
5632369 |
aaagaattaagcctcccccttgatgatctggaaatgaaggtgataagcatcggtgaagctgaggtaa |
5632435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 5457354 - 5457280
Alignment:
| Q |
326 |
attccctttacttgtggtgtaggctttgagcttccttcaagcattcttcacatcaaaatttaccctgactagtgg |
400 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||| ||||||| | |||||||| |
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|
| T |
5457354 |
attccctttaattgcggtgtaggctttgagcttccttggagcattcttgacatcaagatttaccttaactagtgg |
5457280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 5435456 - 5435389
Alignment:
| Q |
337 |
ttgtggtgtaggctttgagcttccttcaagcattcttcacatcaaaatttaccctgactagtggactt |
404 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| ||||||| ||||||| |||||||||||||| |
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|
| T |
5435456 |
ttgtggtgtaggctttgggcatccttgggacattcttgacatcaagatttaccttgactagtggactt |
5435389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 1194528 - 1194472
Alignment:
| Q |
436 |
tttgacatcaaagcaaaaacaaactagttggttgatttaatgatctttcaaatgagc |
492 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
1194528 |
tttgacatcaaagtagaaacaaactagttggttagtttgatgatctttcgaatgagc |
1194472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 1188907 - 1188858
Alignment:
| Q |
522 |
ttgtgttttgaataatatctagaaatcctggaccttggtttgtcatatca |
571 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||||||| |||||| |
|
|
| T |
1188907 |
ttgtgttttgaacaatagctagaaatcttgaaccttggtttgtaatatca |
1188858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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