View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_20 (Length: 250)
Name: NF21068_low_20
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 28902911 - 28902678
Alignment:
| Q |
14 |
gaatgcaatgtttcactttaaagaataaaagtacgatcctagttatagaattttaccttatagactataacaaaatgtcaaaatgtgacatttttctcat |
113 |
Q |
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| T |
28902911 |
gaatgcaatgtttcactttaaagaataaaagtacgatcctagttatagaattttaccttatagactataacaaaatgtcaaaatgcgacatttttctcat |
28902812 |
T |
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| Q |
114 |
tgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccaggctgtatcaattttctct |
213 |
Q |
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| T |
28902811 |
tgaacttcaaaattgttttagttcattattttcttggttggaaactctgaattgagtaaagaaagttcat---tttatccatgctgtatcaattttctct |
28902715 |
T |
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| Q |
214 |
ttattcgtatatcttaagattatgtattttttcattt |
250 |
Q |
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| T |
28902714 |
ttattcatatatcttatgattatgtattttttcattt |
28902678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 28936019 - 28935894
Alignment:
| Q |
103 |
atttttctcattgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccaggctgtat |
202 |
Q |
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| T |
28936019 |
atttttctcatagaactttaataatgttttatttcattcttttcttggttggaaactcggaattgagtaaag-aagttcatctctttatccaggcggtat |
28935921 |
T |
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| Q |
203 |
caattttctctttattcgtatatctta |
229 |
Q |
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| T |
28935920 |
aaattttctctttctccatatatctta |
28935894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 28892821 - 28892733
Alignment:
| Q |
162 |
gaattgagtaacgaaagttcatctctttatccaggctgtatcaattttctctttattcgtatatcttaagattatgtattttttcattt |
250 |
Q |
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| T |
28892821 |
gaattgagtaaagaaagttcatctcttcatccaggctgtataaatttcctctttatccatataccttatcattatgtgctttttcattt |
28892733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 34009775 - 34009634
Alignment:
| Q |
97 |
tgtgacatttttctcattgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccagg |
196 |
Q |
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| T |
34009775 |
tgtgacttttttcttattgaacttcaatattgttttatttcattattttcttggttggaatctcagaattgagtaaaataagttcatctctatatccagg |
34009676 |
T |
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| Q |
197 |
ctgtatcaattttctctttattcgtatatcttaagattatgt |
238 |
Q |
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| T |
34009675 |
ctgtatcaattttctctttatttgtatatcttataattatgt |
34009634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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