View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_24 (Length: 239)
Name: NF21068_low_24
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4257394 - 4257173
Alignment:
| Q |
1 |
cagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcagacatatcttc |
100 |
Q |
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| T |
4257394 |
cagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttccttagacatatcttc |
4257295 |
T |
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| Q |
101 |
gagctctggtggacaatttccactgaaaccaaatcgaaacgccttgttacaaatgagttcccatgatttgtttggagacaagggttgcaacttgtgcact |
200 |
Q |
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| T |
4257294 |
gagctctggtggacaatttccactgaaaccaaatcgaaacgccttgttacaaatgagttcccatgatttgtttggagacaagggttgcaacttgtgcact |
4257195 |
T |
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| Q |
201 |
tgaacaaccgaatctttcctac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4257194 |
tgaacaaccgaatctttcctac |
4257173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 3310095 - 3310171
Alignment:
| Q |
9 |
gttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
85 |
Q |
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| T |
3310095 |
gttttagcttttgttgacaaaagacctccaatggccacaattgccagtggtagtcctccacatttttgaacaatttc |
3310171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 3220945 - 3221018
Alignment:
| Q |
21 |
gttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcagacat |
94 |
Q |
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| T |
3220945 |
gttgataaaagaccaccaatggccacaattgccagtggtaatcctccacatttttgaacaatttcctcggacat |
3221018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 3321694 - 3321770
Alignment:
| Q |
9 |
gttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
85 |
Q |
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||||||||||| |||||||| |||||||| || ||||||||||| || |||| | ||||||||| ||||||||| |
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| T |
3321694 |
gttttatcttttgttgacaaaagacctccaatggccacaattgccagtggtagttctccacattttttaacaatttc |
3321770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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