View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_26 (Length: 238)
Name: NF21068_low_26
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_26 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 5332438 - 5332218
Alignment:
| Q |
18 |
cgagtcatcctcatccatgcctaatcttacctcgggaacaatatctccttcgctgcaacaaagtattacatgaatttagtttcaagtcgcacatttactt |
117 |
Q |
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| T |
5332438 |
cgagtcatcctcatccatgcctaatcttacctcgggaacaatatctccttcgctgcaacaaagtattacatgaatttagtttcaagtcgcacatttactt |
5332339 |
T |
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| Q |
118 |
tagatttatatgcattgtccttattagctgagccaagctcacgaggacgcatttttgtttataatgtagagcttgcatgactacatagaattgaattgaa |
217 |
Q |
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|| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5332338 |
taaatttatatgcattgtccttattagttgagctaagctcacgaggacgcatttttgtttataatgtagagcttacatgactacatagaattgaattgag |
5332239 |
T |
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| Q |
218 |
ggactaaattttattttattt |
238 |
Q |
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| T |
5332238 |
ggactaaattttattttattt |
5332218 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 22589607 - 22589567
Alignment:
| Q |
18 |
cgagtcatcctcatccatgcctaatcttacctcgggaacaa |
58 |
Q |
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| T |
22589607 |
cgagtcttcctcatccatgcctaatcttacctggggaacaa |
22589567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 1861837 - 1861877
Alignment:
| Q |
126 |
tatgcattgtccttattagctgagccaagctcacgaggacg |
166 |
Q |
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| T |
1861837 |
tatgcattgtccatatcagctgagctaagctcacgaggacg |
1861877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4004 - 4045
Alignment:
| Q |
18 |
cgagtcatcctcatccatgcctaatcttacctcgggaacaat |
59 |
Q |
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| T |
4004 |
cgagtcttcctcatccatgcctaatcttaccaggggaacaat |
4045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 27449473 - 27449513
Alignment:
| Q |
126 |
tatgcattgtccttattagctgagccaagctcacgaggacg |
166 |
Q |
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| T |
27449473 |
tatgcattgtccatattaactgagctaagctcacgaggacg |
27449513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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