View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_27 (Length: 237)
Name: NF21068_low_27
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 34584848 - 34585061
Alignment:
| Q |
9 |
agatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
108 |
Q |
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| T |
34584848 |
agatgcaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
34584947 |
T |
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| Q |
109 |
gatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
208 |
Q |
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| T |
34584948 |
gatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
34585047 |
T |
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| Q |
209 |
tcgacgcatttttt |
222 |
Q |
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| T |
34585048 |
tcgacgcatttttt |
34585061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 34586493 - 34586641
Alignment:
| Q |
51 |
ctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaaga |
150 |
Q |
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| T |
34586493 |
ctaattaatattgtgaatggatatgaaaatgtgttctcaactgaatcgatagttatcaaatcattatgt----acagttgttggtatcctactaaga--- |
34586585 |
T |
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| Q |
151 |
tggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgata |
206 |
Q |
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| T |
34586586 |
tgtaagaaaattacttcatgagcatgagtcaacattgttacaatacaagcatgata |
34586641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 34582916 - 34583022
Alignment:
| Q |
68 |
tggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttc |
167 |
Q |
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| T |
34582916 |
tggatatgaaaatgtgttctcaactaaatcaatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaattc |
34583012 |
T |
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| Q |
168 |
atgagcatga |
177 |
Q |
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| T |
34583013 |
acgagcatga |
34583022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 27016162 - 27015953
Alignment:
| Q |
10 |
gatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcag |
109 |
Q |
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| T |
27016162 |
gatgcaaatgttgttcttgatcttgacttgcaataatcaacccaattaatgttgtgaatg--tatgaaaatctgttttcaacttaatcaatagtaattaa |
27016065 |
T |
|
| Q |
110 |
atcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacct |
209 |
Q |
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| T |
27016064 |
atcaatatttttgtacaatttt-ggcatcatactaagaagatggaaggaaattacttcatgagcaattgtcaacatcgttacagtacaagcatgatacct |
27015966 |
T |
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| Q |
210 |
cgacgcatttttt |
222 |
Q |
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| T |
27015965 |
tgatgcatttttt |
27015953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 51201168 - 51201289
Alignment:
| Q |
54 |
attaatattgtgaatggatatgaaaatttgttttcaacttaatc-aatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatg |
152 |
Q |
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| T |
51201168 |
attaatattgtaaatgaatctgaaaatgtgttttcaaattaatccaatagtaatcagataaatatttttgttcaatttttggcatcatact---aagatg |
51201264 |
T |
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| Q |
153 |
gaagaaaattacttcatgagcatga |
177 |
Q |
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| T |
51201265 |
taagaaaattacttcatgatcatga |
51201289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 5327851 - 5327807
Alignment:
| Q |
178 |
gtcaacatcgttacagtacaagcatgatacctcgacgcatttttt |
222 |
Q |
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| T |
5327851 |
gtcaacatcgttatagtacaagcatgataccttgatgcatttttt |
5327807 |
T |
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