View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_28 (Length: 237)
Name: NF21068_low_28
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26744982 - 26744762
Alignment:
| Q |
1 |
atgtcaaattttatggatatgattatggtacttacgcaaattatacctataaacaatgtaagcatttgtgcatgcgactgtgtgagtgtatcggatttga |
100 |
Q |
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| T |
26744982 |
atgtcaaattttatggatatgattatggtacttacgcaaattatacctataaacaatgtaagcatttgtgcatgcgactgtgtgagtgtatcggatttga |
26744883 |
T |
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| Q |
101 |
atacacatatcggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcattcaccacatttccaaaaatcaattttcttg |
200 |
Q |
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| T |
26744882 |
atacacatatcggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcattcaccacatttccaaaaatcaattttcttg |
26744783 |
T |
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| Q |
201 |
ctattgccgaaagacaatatt |
221 |
Q |
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|||||||||||| |||||||| |
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| T |
26744782 |
ctattgccgaaaaacaatatt |
26744762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 26699536 - 26699484
Alignment:
| Q |
33 |
tacgcaaattatacctataaacaatgtaagcatttgtgcatgcgactgtgtga |
85 |
Q |
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|||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26699536 |
tacgaaaattacacctataaacaatgtaagcatttgtgtttgcgattgtgtga |
26699484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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