View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21068_low_29 (Length: 231)

Name: NF21068_low_29
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21068_low_29
NF21068_low_29
[»] chr4 (10 HSPs)
chr4 (1-211)||(8036056-8036266)
chr4 (25-211)||(8410939-8411128)
chr4 (28-211)||(8041470-8041656)
chr4 (100-211)||(8354666-8354777)
chr4 (25-204)||(9138661-9138843)
chr4 (100-157)||(8359268-8359325)
chr4 (104-211)||(8416620-8416730)
chr4 (104-168)||(8403967-8404031)
chr4 (100-149)||(8356233-8356282)
chr4 (100-149)||(43144592-43144641)
[»] chr2 (3 HSPs)
chr2 (25-211)||(33084096-33084280)
chr2 (104-176)||(24844593-24844665)
chr2 (169-211)||(24845317-24845359)
[»] chr7 (1 HSPs)
chr7 (100-168)||(5476502-5476570)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8036266 - 8036056
Alignment:
Q  1 attaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8036266 attaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaattaatgggtatgggaagtgtccaa 8036167  T
Q  101 aatctgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtaggaataacacagatacaaagtgtccaaaatctct 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8036166 aatctgagttactccctttaatctttggctctcattctttgacatttcttgatctttgttatagtaggaataacacggatacaaagtgtccaaaatctct 8036067  T
Q  201 tcacttgcctg 211  Q
    |||||||||||    
T  8036066 tcacttgcctg 8036056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 8410939 - 8411128
Alignment:
Q  25 gaagaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgagttactccctttaatct 124  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  8410939 gaagaagagctatgcaaactcattaatataaatccactactctctttgaaaattaatgggtatggaaagtgtccaaaatctgagttactccctttaatct 8411038  T
Q  125 ttggctctcactctttgacatttcttgatctttg---ttatagtaggaataacacagatacaaagtgtccaaaatctcttcacttgcctg 211  Q
    |||||||||||||||||||||||||||| |||||   |||||||||| || ||    || ||||||||||||||||||||||||| ||||    
T  8411039 ttggctctcactctttgacatttcttgagctttgttattatagtaggtatgacgggcatgcaaagtgtccaaaatctcttcacttacctg 8411128  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 8041656 - 8041470
Alignment:
Q  28 gaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgagttactccctttaatctttg 127  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||||    
T  8041656 gaagagctatgtaaactcattaatataaatccgctactctctttgaaaattaatgggtatggaaggtgtccaaaatctgagttacttcctttaatctttg 8041557  T
Q  128 gctctcactctttgacatttcttgatctttg---ttatagtaggaataacacagatacaaagtgtccaaaatctcttcacttgcctg 211  Q
    ||||||||||||||||||||||||| |||||   ||||||| || || ||    || ||||||||||||||||||||||||| ||||    
T  8041556 gctctcactctttgacatttcttgagctttgttattatagttggtatgacgggtatgcaaagtgtccaaaatctcttcacttacctg 8041470  T

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Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 8354777 - 8354666
Alignment:
Q  100 aaatctgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtaggaataacacagatacaaagtgtccaaaatctc 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8354777 aaatccgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtaggaataacacggagacaaagtgtccaaaatctc 8354678  T
Q  200 ttcacttgcctg 211  Q
    ||||||||||||    
T  8354677 ttcacttgcctg 8354666  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 9138843 - 9138661
Alignment:
Q  25 gaagaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtgtccaaaatctgag---ttactccctttaa 121  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||   |||||||  ||||||||||||||||||   ||||||||||||     
T  9138843 gaagaagacctatataaactcattaaaataaatccacttctctctttgaaaatttttgggtatgcaaagtgtccaaaatctgagttattactccctttac 9138744  T
Q  122 tctttggctctcactctttgacatttcttgatctttgttatagtaggaataacacagatacaaagtgtccaaaatctcttcac 204  Q
    |||||||||||| |||||||||||||||||| |||| |||| ||| ||| |||    || |||||||||||||||||||||||    
T  9138743 tctttggctctcgctctttgacatttcttgacctttcttattgtatgaaaaacgggtatgcaaagtgtccaaaatctcttcac 9138661  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 8359325 - 8359268
Alignment:
Q  100 aaatctgagttactccctttaatctttggctctcactctttgacatttcttgatcttt 157  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  8359325 aaatatgagttcctccctttaatctttggctctcactctttgacatttcttgagcttt 8359268  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 8416620 - 8416730
Alignment:
Q  104 ctgagttactccctttaatctttggctctcactctttgacatttcttgatct---ttgttatagtaggaataacacagatacaaagtgtccaaaatctct 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||   || |||||||||| || ||    || | |||||||||||||||||    
T  8416620 ctgagatactcccgttaatctttggctctcactctttgacatttcttgagctttcttattatagtaggtatgactggtatgcgaagtgtccaaaatctct 8416719  T
Q  201 tcacttgcctg 211  Q
    |||||| ||||    
T  8416720 tcacttacctg 8416730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 8403967 - 8404031
Alignment:
Q  104 ctgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtagg 168  Q
    |||||||||| |||||||||||   |||||||||||||||||||||||| |||| |||| |||||    
T  8403967 ctgagttactacctttaatcttaacctctcactctttgacatttcttgagctttcttatcgtagg 8404031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 8356282 - 8356233
Alignment:
Q  100 aaatctgagttactccctttaatctttggctctcactctttgacatttct 149  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||    
T  8356282 aaatctgagttactccctttaatctcgacctctcactctttgacatttct 8356233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 43144641 - 43144592
Alignment:
Q  100 aaatctgagttactccctttaatctttggctctcactctttgacatttct 149  Q
    |||||||| ||||||||||||||||  | |||||||||||||||||||||    
T  43144641 aaatctgatttactccctttaatctcagtctctcactctttgacatttct 43144592  T

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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 33084096 - 33084280
Alignment:
Q  25 gaagaagagctatataaactcattaatataaatccactactctctttgaaaattaacgggtatgggaagtg---tccaaaatctgagttac----tccct 117  Q
    |||| ||| |||| ||||||| |||| ||||||||||| ||||||||||||||||| |||  | ||  |||   |||||||||||||||||    |||||    
T  33084096 gaaggagacctatgtaaactcgttaaaataaatccacttctctctttgaaaattaatgggcgtcggtcgtgctgtccaaaatctgagttacgtactccct 33084195  T
Q  118 ttaatctttggctctcactctttgacatttcttgatctttgttatagtaggaataacacagatacaaagtgtccaaaatctcttcacttgcctg 211  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||         || ||||||||||||||||||||||||||||||    
T  33084196 ttaatctttggctctcactctttgacatttcttgagctttcttatggtagga---------atgcaaagtgtccaaaatctcttcacttgcctg 33084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 24844593 - 24844665
Alignment:
Q  104 ctgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtaggaataacac 176  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24844593 ctgagttactctcttcaatctttggctctcattctttgacatttcttgatctttcttatagtaggaataacac 24844665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 24845317 - 24845359
Alignment:
Q  169 aataacacagatacaaagtgtccaaaatctcttcacttgcctg 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  24845317 aataacacggatacaaagtgtccaaaatctcttcacttgcctg 24845359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 5476502 - 5476570
Alignment:
Q  100 aaatctgagttactccctttaatctttggctctcactctttgacatttcttgatctttgttatagtagg 168  Q
    |||||||| |||||||||||||| || | |||| |||| |||||||| ||||| |||| |||| |||||    
T  5476502 aaatctgatttactccctttaattttagcctctaactccttgacattccttgagctttcttatcgtagg 5476570  T

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