View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_3 (Length: 626)
Name: NF21068_low_3
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Complemental strand, 12706867 - 12706290
Alignment:
| Q |
19 |
ggattttagtcactcagcattgaataataactaacaaagcttcaaagctcttatgagtacataaataccaacgaacaaaacagatgtcacacttgtcata |
118 |
Q |
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| T |
12706867 |
ggattttagtcactctgcattgaataataactaacaaagcttcaaagctcttatgagtacataaataccaacgaacaaaacagatgtcacacttgtcata |
12706768 |
T |
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| Q |
119 |
aggccacaaatcaatagttgcacaaatagaattgtgaaacaaaatgcgaaaatgtgcattaacagaaatccccagtagcagggttccacaatacggtttt |
218 |
Q |
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| T |
12706767 |
aggccacaaatcaatattagcacaaatagaattgtgaaacaaaatgcgaaaatgtgaattaacagaaatccccagtagcagggttccacaatacagtttt |
12706668 |
T |
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| Q |
219 |
tacaccatagtcatagctttaaatgagacaaagaatgccattaacgctagcaaaccccaaaatctcaatagataaatcatcatcttaagaacagccaaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12706667 |
tacaccatagtcatagctttaaatgagacaaagaatgccattaacgctagcaaaacccaaaatctcaatagataaatcatcatcttgagaacagccaaac |
12706568 |
T |
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| Q |
319 |
catgaaatttatttccaattgtta-nnnnnnncattttgggtatatatcttatcttctttaaatgtggaatatttgtttgcttaattgataagaaatgag |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12706567 |
catgaaatttatttccaattgttattttttttcattttgggtatatatcttatcttctttaaatgtggaatatttgtttgcttaattgataagaaatgag |
12706468 |
T |
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| Q |
418 |
taaattaccctcctctattttctttcaaagatgtttaaattagagttcccttccttctaaattgaaagaggtagaatatttttctgtgttagggaatata |
517 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12706467 |
taaattacccttctctattttctttcaaagatgtttaaattagagttcccttccttctaaattgaaagaggtagaatatttttctgtgttagggattata |
12706368 |
T |
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| Q |
518 |
cnnnnnnngttatcatcatataggtatgaaaattcatagagattttccgaatcctccatgatcactttcaaatcagta |
595 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12706367 |
ctttttttgttatcatcatataggtatgaaaattcatagagattttccaaatcctccatgatcactttcaaatcagta |
12706290 |
T |
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