View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21068_low_36 (Length: 205)
Name: NF21068_low_36
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 50243952 - 50244149
Alignment:
| Q |
1 |
tttatagattggttcttattggtgttggtgctggtgtgagtttgtctgttaatatttgcatttaccctatttggtctggagaggatctccacaaattggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50243952 |
tttatagattggttcttattggtgttggtgctggtgtgagtttgtctgttaatatttgcatttaccctatttggtccggagaggatctccacaaattggt |
50244051 |
T |
|
| Q |
101 |
cgtcaaaaatttccacggagttgctgcatctgtagaaggttattactcgtttatttcacatgtttcccgttttcattttcagaaatttgtctgtgctg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50244052 |
cgtcaaaaatttccacggagttgctgcatctgtagaaggttattacttgtttatttcacatgtttcccgttttcattttcagaaatttgtttgtgctg |
50244149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University