View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_5 (Length: 546)
Name: NF21068_low_5
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 101 - 530
Target Start/End: Original strand, 43868182 - 43868611
Alignment:
| Q |
101 |
tattgacgaggctgatgaggagcagttgctgtgtcgtgtgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgtt |
200 |
Q |
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| T |
43868182 |
tattgatgaggctgatgaggagcagttgctgtgtcgtgtgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgtt |
43868281 |
T |
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| Q |
201 |
gattttgaggaaatgtgtgacttggatagtttctgtgagtttgatgttgatcttgctgaatttgcagctaatgttgaaagtttacttggtgttgggagta |
300 |
Q |
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| T |
43868282 |
gattttgaggaaatgtgtgacttggatagtttctgtgagtttgatgttgatcttgctgaatttgcagctaatgttgaaagtttacttggtgttgggagta |
43868381 |
T |
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| Q |
301 |
gtgagattcaagagaattcatcaggacaagtgtttgattataaacaagagaatgaaatggatgcatccaaaaatgaaatgttaaaggttaaggatgaaga |
400 |
Q |
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| T |
43868382 |
gtgagattcaagagaattcatcaggacaagtgtttgattataaacaagagaatgaaatggatgcatccaaaagtgaaatgttaaaggttaaggatgaaga |
43868481 |
T |
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| Q |
401 |
acttgatgatttggaatcagtttttgacatgacaagtgatgatgtttttcattggaatattgataataatgatgtatcactagcacaacaagagaaagag |
500 |
Q |
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| T |
43868482 |
acttgatgatttggaatcagtttttgacatgacaagtgatgatgtttttcattggaatattgataataatgatgtatcactagcacaacaagagaaagag |
43868581 |
T |
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| Q |
501 |
tatatgcctttgagtaatagtagtgttggt |
530 |
Q |
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| T |
43868582 |
tatatgcctttgagtaatagtagtgttggt |
43868611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 43868196 - 43868109
Alignment:
| Q |
19 |
tcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattga |
106 |
Q |
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| T |
43868196 |
tcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattga |
43868109 |
T |
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