View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_6 (Length: 539)
Name: NF21068_low_6
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 152 - 525
Target Start/End: Original strand, 47170541 - 47170914
Alignment:
| Q |
152 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatgga |
251 |
Q |
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| T |
47170541 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatgga |
47170640 |
T |
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| Q |
252 |
tggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctac |
351 |
Q |
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| T |
47170641 |
tggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggaaaaatcccctcattcctac |
47170740 |
T |
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| Q |
352 |
ctcgcctacaccggtgcagaagaatttgctagggaacaggttcatatcattacttctcttttttattccaatttttgatgcataaatatatttgttttta |
451 |
Q |
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| T |
47170741 |
ctcgcctacaccggtgcagaagaatttgctagggaacaggttcatatcattacttctcttttttattcaaatttttgatgcataaatatatttgttttta |
47170840 |
T |
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| Q |
452 |
atcaaaagaaatttggtcatgttttttctagggcgtggagactgaggacaatgaatatttcatcactcctgata |
525 |
Q |
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| T |
47170841 |
atcaaaagaaatttggtcatgttttttctagggcgtggagactgaggacaatgaatatttcatcactcctgata |
47170914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 47170407 - 47170470
Alignment:
| Q |
18 |
gggataatgttacatgcatgcctatgcacataaatgaatcaaatccataatgacaacaatataa |
81 |
Q |
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| T |
47170407 |
gggataatgttacatgcatgcctatgcacataaatgaatcaaatccataatgacaataatataa |
47170470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 184 - 394
Target Start/End: Complemental strand, 42163781 - 42163571
Alignment:
| Q |
184 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
283 |
Q |
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| T |
42163781 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtgctgtatctg |
42163682 |
T |
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| Q |
284 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctacctcgcctacaccggtgcagaagaatttgctag |
383 |
Q |
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| T |
42163681 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacctaggcttctctggggcagaagaatttgcgag |
42163582 |
T |
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| Q |
384 |
ggaacaggttc |
394 |
Q |
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| T |
42163581 |
ggaccaggttc |
42163571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 5480762 - 5480537
Alignment:
| Q |
169 |
gaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagat |
268 |
Q |
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| T |
5480762 |
gaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatggaccaaaaagacgat |
5480663 |
T |
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| Q |
269 |
gtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctacctcgcctacaccggtgc |
368 |
Q |
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| T |
5480662 |
gcggtgccgtttcaggtttaaccacggtaaaaaatccaatttcactggctcgtttagtcatggataaatctcctcattcctatcttgcttttaacggcgc |
5480563 |
T |
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| Q |
369 |
agaagaatttgctagggaacaggttc |
394 |
Q |
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| T |
5480562 |
tgaagattttgctaggcaacaggttc |
5480537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 42163378 - 42163324
Alignment:
| Q |
471 |
tgttttttctagggcgtggagactgaggacaatgaatatttcatcactcctgata |
525 |
Q |
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||||||| |||||| ||||| | |||||| |||||||| |||||||||||||||| |
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| T |
42163378 |
tgtttttgctagggtgtggatattgaggataatgaatacttcatcactcctgata |
42163324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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