View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_8 (Length: 442)
Name: NF21068_low_8
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 39385509 - 39385141
Alignment:
| Q |
20 |
gtaaccactaatttaattgaccatctttgataaactctctcctcttcttaaccatttcttcatatgtaatacacacaccccgttctgctattgcttgatg |
119 |
Q |
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| T |
39385509 |
gtaaccactaatttaattgaccatctttgataaactctctcctctt---aaccatttcttcatatgtaatacac----cccgttctgctattgcttgatg |
39385417 |
T |
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| Q |
120 |
ttgatataaataatgacaccaagcaagcattgctgcattg--------------------tttgttccctttgaccaagaatattctctgtattgtttta |
199 |
Q |
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| T |
39385416 |
ttgatataaataatgacaccaagcaagaattgctgcattggcatcaaagttacaaatttatttgttccctttgaccaagaatattctctgtattgtttta |
39385317 |
T |
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| Q |
200 |
gtttattatagctattgatttgattcgtactaattaaattaataacatcattcatctcttgttttgtatggctggccacaactattgcaactgaagcaga |
299 |
Q |
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| T |
39385316 |
gtttattatagctattgatttgattcgtactaattaaattaataacatcattcttctcttgttttg-atggctggccacaactattgcaactgaagcaga |
39385218 |
T |
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| Q |
300 |
tttacacctgtcttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagccttc |
376 |
Q |
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| T |
39385217 |
tttacacctgtcttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagccttc |
39385141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 39384711 - 39384662
Alignment:
| Q |
382 |
ttttctatattaagcaatatccccattactagcactaattttattttcat |
431 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39384711 |
ttttatatattaagcaatgtccccattactagcactaattttattttcat |
39384662 |
T |
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