View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_low_9 (Length: 366)
Name: NF21068_low_9
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 107 - 351
Target Start/End: Complemental strand, 39677347 - 39677105
Alignment:
| Q |
107 |
gtgttcagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtat |
206 |
Q |
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| T |
39677347 |
gtgttcagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtat |
39677251 |
T |
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| Q |
207 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaattt-ggacaattttatagttgtatacttgtatttgggaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
39677250 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaa |
39677151 |
T |
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| Q |
306 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677150 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcat |
39677105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 39678241 - 39678153
Alignment:
| Q |
19 |
agttttactttacttacatattattttgatttgtttcttaatttccctatctaggactaagtagtgtatcccctaaatatatgagttag |
107 |
Q |
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| T |
39678241 |
agttttactttacttacatattattttgatttgtttcttaatttccctatctaggactaagtagtgtatctcctaaatatacgagttag |
39678153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 26868609 - 26868509
Alignment:
| Q |
40 |
tattttgatttgtttcttaatttccctatctaggacta-agtagtgtat-cccctaaatatatgagttagtgttcagtcttttgtatcaagttattatca |
137 |
Q |
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|||||||||||||||||| || ||||||| |||| ||| ||| ||||| |||||| ||||| | ||||||||| ||||||| |||||||||| |||||| |
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| T |
26868609 |
tattttgatttgtttcttgatatccctatttagggctagagtcttgtatccccctatatataggggttagtgtttagtctttggtatcaagttgttatca |
26868510 |
T |
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| Q |
138 |
a |
138 |
Q |
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| T |
26868509 |
a |
26868509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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