View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21069_low_1 (Length: 607)
Name: NF21069_low_1
Description: NF21069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21069_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 48 - 598
Target Start/End: Original strand, 27313572 - 27314122
Alignment:
| Q |
48 |
agcatgccaaagttgttgtcgcacatcatgcttcctgaaactccattcgccactataagcaaaccgagtaaagaaaccaagaagaatttgtccatannnn |
147 |
Q |
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| T |
27313572 |
agcatgccaaagttgttgtcgcacatcatgcttcctgaaactccattcgccactataagcaaaccgagtaaagaaaccaagaagaatttgtccatatttt |
27313671 |
T |
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| Q |
148 |
nnnn-cctgtttgttggctgtatattgtaaggaatgtggctgatttgattaatgcatatgaatactttggttataatttatatagcatagattagctttg |
246 |
Q |
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| T |
27313672 |
tttttcctgtttgttggctgtatattgtaaggaatgtggttgatttgattaatgcatatgaatactttggttataatttatatagcatagattagctttg |
27313771 |
T |
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| Q |
247 |
gaaaatgaaggatttggagggctttatggcttggcttgtaagtggatgaaggtgttacatttttccacatgcctacacttaaagtacaagaaataaaaat |
346 |
Q |
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| T |
27313772 |
gaaaatgaaggatttggagggctttatggcttggcttgtaagtggatgaaggtgttacatttttccacatgcctacacttaaagtacaagaaataaaaat |
27313871 |
T |
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| Q |
347 |
atttgtaatagtttgctttactcatcaaccatttaaagaactcacaaccattatgcactatctccactatgcctctctgaaagagaattgaagataggaa |
446 |
Q |
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| T |
27313872 |
atttgtaatagtttgctttactcatcaaccatttaaagaactcacaaccattatgcactatctccactatgcctctctgaaagagaattgaagataggaa |
27313971 |
T |
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| Q |
447 |
agtttgattattgcatattctaaactatatcnnnnnnnngcataatacaatgtcacacacaaaagggggcgggaaattatttttctacttatagaatcat |
546 |
Q |
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| T |
27313972 |
agtttgattattgcatattctaaactatatc-tttttttgcataatacaatgtcacacacaaaatggggcgggaaattatttttctacttatagaatcat |
27314070 |
T |
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| Q |
547 |
taagtttgttacaccaaacaagggaaacacaaatgcataccatcatattctt |
598 |
Q |
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| T |
27314071 |
taagtttgttacaccaaacaagggaaacacaaatgcataccctcattttctt |
27314122 |
T |
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