View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21069_low_2 (Length: 588)
Name: NF21069_low_2
Description: NF21069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21069_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 263 - 569
Target Start/End: Original strand, 36955688 - 36955991
Alignment:
| Q |
263 |
attaattagttttggttactttcccatgtcaaattggtgacatatcattgcagtatatagatgctttcgttggtacattgtccatgaatcacttataaac |
362 |
Q |
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| T |
36955688 |
attaattagttttggttactttcccatgtcaaatttgtgacatatcattgcagtatatagatgcttt---tgatacattgtctatgaatcacttataaac |
36955784 |
T |
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| Q |
363 |
cagctgcatcccaaactcaatagtttgaatgttccaattattaagctaaaatagtttgatttttgttttaattctcaagtgggtttttgaaatccagaaa |
462 |
Q |
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| T |
36955785 |
cagctgcattccaaactcaatagtttgaatgttccaattattaagctaaaatagtttgatttttgttttaattctcaagtggatttttaaaatccagaaa |
36955884 |
T |
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| Q |
463 |
aataaacttaatttctatagtagttaacatcaaggggttaataattgatcttataggatagtggactagaagtctatgattatttttggtcaataatata |
562 |
Q |
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| T |
36955885 |
gataaatttaatttctatagtagttaacatcaaggggttaataattgatcttataggatagtggactagaagtctatgattatttttggtcaataatata |
36955984 |
T |
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| Q |
563 |
caggact |
569 |
Q |
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||||||| |
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| T |
36955985 |
caggact |
36955991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 36955476 - 36955686
Alignment:
| Q |
12 |
aagaaatagttaatattgctttggaaactaaatatgatattcattttataatattttttaaaaagtaacactcattttataacatatagagtaacatttt |
111 |
Q |
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| T |
36955476 |
aagaaatagttaatattgctttggagattaaatatgatattcattttataatattttttaaaaagtaacactcattttataac------------atttt |
36955563 |
T |
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| Q |
112 |
aagtaaaacgataaaattaaaatagaaatcatattgcatattgtttaagaggagcacatgtaaatgacaagagcacaagtcaatgatatcatgtgatgat |
211 |
Q |
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| T |
36955564 |
aagtaaaacgataaaattaaaatagaaatcagattgcatattgtttaagaggagcacatgtaaatgacaagagcacaagtcaatgatatcatgtgatgat |
36955663 |
T |
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| Q |
212 |
gcacttatacaaatcaaagttgt |
234 |
Q |
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| T |
36955664 |
gcacttaaacaaatcaaagttgt |
36955686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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