View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21069_low_3 (Length: 426)
Name: NF21069_low_3
Description: NF21069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21069_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 4144691 - 4145072
Alignment:
| Q |
16 |
catgattcatctgaaatcaccttttggttgagcaacattctaacactcttacagcatctagaaacacaccaaataaccc-gtgtataatattattcttta |
114 |
Q |
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| T |
4144691 |
catgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagcatatagaaaatc-caaactatgcaagtgtatattattattcttta |
4144789 |
T |
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| Q |
115 |
aaattccaatccctctgaaaaagtatgagtgattatcgttagagcattgtagtttcagattctatacatagtatacttttcatattattgatgattattg |
214 |
Q |
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| T |
4144790 |
aaattccaatccctctgaaaaagtataagtgattatcgttagagcattgtagtttcagattctatacatagtatacttttcatattattgatgatt---- |
4144885 |
T |
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| Q |
215 |
atggtttaactaatgtgatgtttgtttgggccgatatgttatgcaatgattgaagcaggacaagtttaatttgattaattgataatgggaagatataaat |
314 |
Q |
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| T |
4144886 |
------taactaatgtgatgtttgtttgggccgatatgttatgcagtgattgaagcaggacaagtttaatttgattaattgataatgggaagatataaat |
4144979 |
T |
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| Q |
315 |
ccataaagaagtacagtttctctgagtcaaactataagtcacatgaggatcattccattaagaatatgaagcaaaattcctatagtagtaaga |
407 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4144980 |
ccataaagaagtacagtttctctgagtcaaactctaagtcacatgaggatcattccattaagaatatgaagcaaaattcctatagtggtaaga |
4145072 |
T |
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