View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21069_low_4 (Length: 316)
Name: NF21069_low_4
Description: NF21069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21069_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 51121898 - 51121712
Alignment:
| Q |
129 |
agttatggatacatatcatatatgcgtgattttttatggaggctcaaagtgactgcttcacaaaaggagtttcattgttga---cgcttgtaaaatcact |
225 |
Q |
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| T |
51121898 |
agttaaggatacatatcatatatgagtgattttttatggaggctcaaagtgactgcttcacaaaaggagtttcattgttgatgacgcttgtaaaatcact |
51121799 |
T |
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| Q |
226 |
aaaatgtagtcatcattgaactaaattttggattaaaatattatcaaatacagaacgtcaacccaaataacatctctgaaacagccc |
312 |
Q |
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| T |
51121798 |
aaaatgtagtcatcattgaactaaattttggattaaaatattatcaaatacagaacgtcaacccaaataacatctctgaaacagccc |
51121712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 51122052 - 51122010
Alignment:
| Q |
92 |
ttcaaagcctattttaaaaccatttttgttcaaaaccagttat |
134 |
Q |
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| T |
51122052 |
ttcaaagcctattttaaaaccatttttgttcaaaaccagttat |
51122010 |
T |
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