View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2106_high_2 (Length: 428)
Name: NF2106_high_2
Description: NF2106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2106_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 21829967 - 21829560
Alignment:
| Q |
1 |
tgtagcaagtggaattgttggtgaacgtgaaagagaagttgttgtaccacaagttgttgatcaaaataaaactcaagggaagaataaatgggttaaggtt |
100 |
Q |
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| T |
21829967 |
tgtagcaagtggaattgttggtgaacgtgaaagagaagttgttgtaccacaagttgttgatcaaaataaaactcaagggaagaataaatgggttaaggtt |
21829868 |
T |
|
| Q |
101 |
aggcaaagtgggaaatcacaaaaagagctttcagctttgcatttatgtcaagaatttcaagcacatgaagggtgtatttggactatgaagtttagtttgg |
200 |
Q |
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| T |
21829867 |
aggcaaagtgggaaatcacaaaaagagctttcagctttgcatttatgtcaagaatttcaagcacatgaagggtgtatttggactatgaagtttagtttgg |
21829768 |
T |
|
| Q |
201 |
atggaaggtttttggctactgctggtgaggataaagtgatacatatttgggaagttcaagaatgtgaggttatgagtatgagaggtgaggaagggaatct |
300 |
Q |
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| T |
21829767 |
atggaaggtttttggctactgctggtgaggataaagtgatacatatttgggaagttcaagaatgtgaggttatgagtatgagaggtgaggaagggaatct |
21829668 |
T |
|
| Q |
301 |
tactcctattcatccttctttgctttcttctatggaaagagnnnnnnntgttgatactcatagtttggttaagaagaaagggaaatttggaagtaaaaga |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829667 |
tactcctattcatccttctttgctttcttcaatggaaagagaaaaaaatgttgatactcatagtttggttaagaagaaagggaaatttggaagtaaaaga |
21829568 |
T |
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| Q |
401 |
ggaggagg |
408 |
Q |
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|||||||| |
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| T |
21829567 |
ggaggagg |
21829560 |
T |
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