View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2106_high_5 (Length: 251)
Name: NF2106_high_5
Description: NF2106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2106_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 1104097 - 1104330
Alignment:
| Q |
1 |
cttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1104097 |
cttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaagtttactacacata |
1104196 |
T |
|
| Q |
101 |
tagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1104197 |
tagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagg |
1104296 |
T |
|
| Q |
201 |
gtttatgaggaagtaccaagagatgattgtgatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1104297 |
gtttatgaggaagtaccaagagatgattgtgatg |
1104330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1087541 - 1087692
Alignment:
| Q |
1 |
cttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaa---caaactttgtgaacaatacaaatgaagtttactacac |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||||| |||||| | || ||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
1087541 |
cttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacat |
1087640 |
T |
|
| Q |
98 |
atatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaaca |
149 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1087641 |
atatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
1087692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 1071950 - 1072030
Alignment:
| Q |
68 |
tgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaac |
148 |
Q |
| |
|
||||| |||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1071950 |
tgtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaac |
1072030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 1047137 - 1047217
Alignment:
| Q |
68 |
tgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaac |
148 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1047137 |
tgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
1047217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1071880 - 1071910
Alignment:
| Q |
1 |
cttggaatggagttggatttagtggagcacc |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1071880 |
cttggaatggagttggatttagtggagcacc |
1071910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University