View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2106_low_5 (Length: 255)
Name: NF2106_low_5
Description: NF2106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2106_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 49591637 - 49591864
Alignment:
| Q |
17 |
acattattcatttacatgcttaaggtagtaaactgaatatgaaattaaagagagtacatcatatattttatatttcatgcgtgacaaagaagatctaaaa |
116 |
Q |
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| T |
49591637 |
acattattgatttacatgcttaaggtagtaaactgaatatgaaattaaagagagtacatcataaattttatatttcatgcgtgacaaagaagatctaaaa |
49591736 |
T |
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| Q |
117 |
tcatctgtacttcttttctttcacaggtccccttggaatcctattgaggactgtagaatccaatttgttgaacaatctcttcacgtcttggtttccttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49591737 |
tcatctgtacttcttttctttcacaggtccccttggaatcctattgagaactgtagaatccaatttgttgaacaatctcttcacgtcttggtttccttta |
49591836 |
T |
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| Q |
217 |
cttgctagataatccacctcatgttcat |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49591837 |
cttgctagataatccacctcatgttcat |
49591864 |
T |
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