View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2106_low_7 (Length: 248)

Name: NF2106_low_7
Description: NF2106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2106_low_7
NF2106_low_7
[»] chr6 (15 HSPs)
chr6 (4-208)||(29310070-29310272)
chr6 (4-206)||(17690266-17690467)
chr6 (4-206)||(27297839-27298040)
chr6 (4-176)||(27380082-27380254)
chr6 (4-176)||(27470465-27470637)
chr6 (4-171)||(29317029-29317196)
chr6 (4-173)||(27278547-27278716)
chr6 (4-173)||(27303438-27303607)
chr6 (4-172)||(11652878-11653046)
chr6 (68-182)||(16393328-16393442)
chr6 (17-158)||(28755128-28755271)
chr6 (4-58)||(17683430-17683484)
chr6 (13-66)||(18336778-18336831)
chr6 (29-104)||(2670013-2670091)
chr6 (71-105)||(19346305-19346339)
[»] scaffold0234 (2 HSPs)
scaffold0234 (4-208)||(10034-10239)
scaffold0234 (4-172)||(1177-1346)
[»] chr4 (25 HSPs)
chr4 (4-208)||(18263392-18263597)
chr4 (4-206)||(5708517-5708719)
chr4 (13-208)||(26964760-26964953)
chr4 (4-171)||(28392002-28392169)
chr4 (4-172)||(5715153-5715320)
chr4 (6-172)||(10620167-10620333)
chr4 (4-206)||(19925562-19925762)
chr4 (5-168)||(20579275-20579438)
chr4 (6-171)||(8859374-8859540)
chr4 (4-169)||(18270253-18270419)
chr4 (6-171)||(55613890-55614055)
chr4 (13-172)||(26971654-26971811)
chr4 (4-171)||(869801-869968)
chr4 (4-156)||(19919381-19919533)
chr4 (6-172)||(10825188-10825352)
chr4 (13-222)||(10676370-10676582)
chr4 (13-222)||(10890010-10890222)
chr4 (8-156)||(5667043-5667192)
chr4 (13-171)||(47387788-47387948)
chr4 (4-171)||(4425468-4425642)
chr4 (13-171)||(35224741-35224903)
chr4 (6-206)||(10627240-10627415)
chr4 (33-67)||(27031782-27031816)
chr4 (92-149)||(55992914-55992971)
chr4 (74-109)||(49066009-49066044)
[»] chr3 (27 HSPs)
chr3 (6-229)||(10578132-10578357)
chr3 (6-206)||(15606254-15606454)
chr3 (4-213)||(13212480-13212686)
chr3 (6-173)||(15599742-15599909)
chr3 (4-171)||(8491564-8491731)
chr3 (4-171)||(6111280-6111446)
chr3 (4-171)||(13258725-13258892)
chr3 (4-207)||(15356408-15356613)
chr3 (6-169)||(10571427-10571591)
chr3 (4-171)||(13517989-13518156)
chr3 (13-171)||(13691871-13692029)
chr3 (4-171)||(17780025-17780190)
chr3 (4-171)||(19081326-19081491)
chr3 (6-171)||(16481318-16481483)
chr3 (13-171)||(18534826-18534984)
chr3 (4-171)||(15341077-15341246)
chr3 (4-158)||(1646367-1646523)
chr3 (6-171)||(18538177-18538342)
chr3 (13-171)||(32055274-32055433)
chr3 (4-158)||(23014214-23014370)
chr3 (73-171)||(12564395-12564493)
chr3 (13-171)||(16201408-16201566)
chr3 (61-166)||(6288184-6288288)
chr3 (58-105)||(17196702-17196749)
chr3 (107-171)||(25801443-25801508)
chr3 (8-67)||(25801377-25801436)
chr3 (71-167)||(47699511-47699607)
[»] scaffold0390 (2 HSPs)
scaffold0390 (6-213)||(12742-12950)
scaffold0390 (6-129)||(5811-5934)
[»] scaffold0657 (1 HSPs)
scaffold0657 (4-213)||(3897-4103)
[»] scaffold0061 (1 HSPs)
scaffold0061 (4-202)||(5025-5223)
[»] scaffold0203 (1 HSPs)
scaffold0203 (6-208)||(29010-29209)
[»] chr1 (10 HSPs)
chr1 (4-182)||(18253210-18253388)
chr1 (4-168)||(18531376-18531540)
chr1 (13-171)||(27130257-27130415)
chr1 (4-173)||(27309410-27309580)
chr1 (4-158)||(16357904-16358060)
chr1 (4-171)||(21169283-21169436)
chr1 (8-172)||(9075750-9075900)
chr1 (8-150)||(22640728-22640874)
chr1 (73-163)||(25662281-25662370)
chr1 (142-207)||(10155031-10155097)
[»] chr7 (15 HSPs)
chr7 (6-202)||(11541810-11542005)
chr7 (4-171)||(29328968-29329135)
chr7 (6-167)||(2652852-2653013)
chr7 (4-171)||(12752039-12752206)
chr7 (11-173)||(15153654-15153817)
chr7 (4-206)||(12739722-12739922)
chr7 (6-171)||(11534921-11535087)
chr7 (47-184)||(11557062-11557199)
chr7 (8-171)||(18562217-18562385)
chr7 (8-168)||(9979012-9979174)
chr7 (13-169)||(18256679-18256836)
chr7 (73-108)||(7748213-7748248)
chr7 (52-96)||(22947653-22947697)
chr7 (8-105)||(30926279-30926378)
chr7 (74-108)||(30918034-30918068)
[»] scaffold0433 (1 HSPs)
scaffold0433 (4-172)||(8288-8456)
[»] scaffold0213 (1 HSPs)
scaffold0213 (4-172)||(4420-4588)
[»] chr5 (10 HSPs)
chr5 (6-206)||(24694286-24694485)
chr5 (6-206)||(24701055-24701254)
chr5 (11-158)||(18565328-18565477)
chr5 (30-141)||(19713396-19713508)
chr5 (29-171)||(28718819-28718960)
chr5 (8-172)||(39539713-39539880)
chr5 (73-167)||(938385-938477)
chr5 (71-164)||(22546232-22546323)
chr5 (71-151)||(17297875-17297953)
chr5 (71-151)||(17313950-17314029)
[»] scaffold1199 (1 HSPs)
scaffold1199 (4-171)||(305-472)
[»] scaffold0705 (1 HSPs)
scaffold0705 (4-207)||(7461-7666)
[»] scaffold0220 (1 HSPs)
scaffold0220 (4-171)||(19493-19660)
[»] scaffold0026 (1 HSPs)
scaffold0026 (13-168)||(26402-26557)
[»] chr8 (10 HSPs)
chr8 (4-171)||(6095326-6095492)
chr8 (4-171)||(15327403-15327569)
chr8 (4-171)||(15507772-15507938)
chr8 (6-169)||(21941849-21942012)
chr8 (22-154)||(28549232-28549364)
chr8 (4-171)||(22172665-22172836)
chr8 (4-138)||(24644128-24644263)
chr8 (13-165)||(24795853-24796005)
chr8 (54-171)||(29230589-29230706)
chr8 (75-171)||(27660698-27660795)
[»] chr2 (5 HSPs)
chr2 (4-159)||(22790703-22790860)
chr2 (8-171)||(18621020-18621184)
chr2 (8-171)||(41664949-41665115)
chr2 (13-158)||(27353547-27353685)
chr2 (29-104)||(12298996-12299072)
[»] scaffold0008 (1 HSPs)
scaffold0008 (14-215)||(229197-229404)
[»] scaffold0063 (1 HSPs)
scaffold0063 (8-158)||(6712-6863)
[»] scaffold1303 (1 HSPs)
scaffold1303 (4-120)||(892-1008)
[»] scaffold0032 (1 HSPs)
scaffold0032 (8-171)||(107107-107270)
[»] scaffold0039 (1 HSPs)
scaffold0039 (13-171)||(87900-88059)
[»] scaffold0502 (1 HSPs)
scaffold0502 (13-151)||(235-373)
[»] scaffold1383 (1 HSPs)
scaffold1383 (137-184)||(4-51)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 29310070 - 29310272
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29310070 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 29310169  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  29310170 ccgtttcattgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagc--ctggttctgattaaatc 29310267  T
Q  204 attaa 208  Q
    |||||    
T  29310268 attaa 29310272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 17690467 - 17690266
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690467 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 17690368  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||    
T  17690367 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagcatc-ggttgtgattaaatc 17690269  T
Q  204 att 206  Q
    |||    
T  17690268 att 17690266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 27297839 - 27298040
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297839 atatttcttctacaaaggttctgctcttcaagaggtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 27297938  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||    
T  27297939 ccgtttcaatgggatttcttccgcaaagaggattaatattttgaaaaacccctcttaaaatcccttcagtggtatcagagcatc-ggttgtgattaaatc 27298037  T
Q  204 att 206  Q
    |||    
T  27298038 att 27298040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 27380254 - 27380082
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27380254 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 27380155  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggt 176  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27380154 ccgtttcaatgggatttcttccgcaaagaggattaaatttttgaaaaacccctcttaaaatcccttcagtggt 27380082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 27470637 - 27470465
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27470637 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 27470538  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggt 176  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27470537 ccgtttcaatgggatttcttccgcaaagaggattaaatttttgaaaaacccctcttaaaatcccttcagtggt 27470465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 29317029 - 29317196
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29317029 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 29317128  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29317129 ccgtttcattgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttca 29317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 27278547 - 27278716
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278547 atatttcttctacaaaggttctgctcttcaagaggtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 27278646  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagt 173  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  27278647 ccgtttcaatgggatttcttccgcaaagaggattaatattttgaaaaacccctcttaaaatcccttcagt 27278716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 27303438 - 27303607
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303438 atatttcttctacaaaggttctgctcttcaagaggtaaacacgtgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 27303537  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagt 173  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  27303538 ccgtttcaatgggatttcttccgcaaagaggattaatattttgaaaaacccctcttaaaatcccttcagt 27303607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 11652878 - 11653046
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11652878 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 11652977  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  11652978 tcgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaaccctcttaaaatcccttcag 11653046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 16393442 - 16393328
Alignment:
Q  68 ttctgtttgatttgtgattaatgatttaatcaagatccgttt-caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcc 166  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||| | |||| |||||||| ||| ||||||||||| |||||||||||||    
T  16393442 ttctggttgatttgtgattaatgatttaataaagatccgttttcaatgagatttgtaccgctaagaggat-aaatttttgaaaaactcctctcaaaatcc 16393344  T
Q  167 cttcagtggtatcaga 182  Q
    ||||||||||||||||    
T  16393343 cttcagtggtatcaga 16393328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 28755271 - 28755128
Alignment:
Q  17 aaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtg-attaatgatttaatcaagatccgtttcaatg 114  Q
    |||| ||||||  |||||||||||||||| |||||| ||||| ||||||| | | | ||| |||| |  |||| |||||||||||||||| |||||| ||    
T  28755271 aaaggttctgcgattcaagaggtaaacacgtgaatccttaaaatgtttaattatgtatttaatttttttattagtgatttaatcaagatctgtttcagtg 28755172  T
Q  115 ggatttcttccgcaaagaggattaaaattttgaaaaacccctct 158  Q
    | |||| |||||| |||| |||||||||||||||||| ||||||    
T  28755171 gaatttgttccgccaagatgattaaaattttgaaaaatccctct 28755128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 17683484 - 17683430
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaag 58  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  17683484 atatttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaag 17683430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 18336778 - 18336831
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaag 66  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  18336778 ctacaaaggttctgctcttcaagaggtaaacacatgaattttaaagtgtttaag 18336831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 2670013 - 2670091
Alignment:
Q  29 cttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgt--ttgatttgtgattaatgatttaatcaagatc 104  Q
    |||||||| |||||||| | |||| ||||||||||||||| | |||  ||||||| ||||||| |||||||||||||||    
T  2670013 cttcaagatgtaaacacgtaaatccttaaagtgtttaagtatatgtgtttgatttttgattaacgatttaatcaagatc 2670091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 19346339 - 19346305
Alignment:
Q  71 tgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||||||||||||||||| ||||||||||||||    
T  19346339 tgtttgatttgtgattaatggtttaatcaagatcc 19346305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 10239 - 10034
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10239 atatttcttctacaaaggttctgctcgtcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 10140  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttga-aaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  10139 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaacccctcttaaaatcccttcagtggtatcagagcttctggttttgattaaat 10040  T
Q  203 cattaa 208  Q
    ||||||    
T  10039 cattaa 10034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 1346 - 1177
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  1346 atatttcttctacaaaggttctgctcgtcaagaggtaaacacatgaatcttaaagtgtttaagtttctaattgatttgtgattaatgatttaatcaagat 1247  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttga-aaaacccctctcaaaatcccttcag 172  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1246 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaacccctcttaaaatcccttcag 1177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 18263392 - 18263597
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18263392 atatttcttctacaaaggttctgctcgtcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 18263491  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttg-aaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  18263492 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaacccctcttaaaatcccttcagtggtatcagagcttctggttttgattaaat 18263591  T
Q  203 cattaa 208  Q
    ||||||    
T  18263592 cattaa 18263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 5708517 - 5708719
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708517 atatttcttatacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 5708616  T
Q  104 ccgtttcaatgggatttcttccgcaa--agaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaa 201  Q
    |||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||| ||||||||    
T  5708617 ccgtttcaatgggatttcttccacaaagagaggattaaaattttg-aaaacccctcttaaaatcccttcagtggtatcagagcatc-ggttgtgattaaa 5708714  T
Q  202 tcatt 206  Q
    |||||    
T  5708715 tcatt 5708719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 26964760 - 26964953
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26964760 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcggtttcaa 26964859  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcattaa 208  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||  ||||||||||||||    
T  26964860 tgggatttcttccgc--agaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagcacttggtttcgattaaatcattaa 26964953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 28392169 - 28392002
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28392169 atatttcttctacaaaggttctgctcttcaagaggtaaacatatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 28392070  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28392069 ccgtttcaatgagatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttca 28392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 5715153 - 5715320
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715153 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 5715252  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  5715253 ccgtttcaatgagatttcttccgcaaagaggattaaaattttg-aaaacccctcttaaaatcccttcag 5715320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 10620333 - 10620167
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10620333 atttctgctacagaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatct 10620234  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10620233 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcag 10620167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 19925762 - 19925562
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19925762 atatttcttctacaaaggttgtgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 19925663  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||| |||| |  |||||||| |||||||||||||||||| |||| ||||||||||    
T  19925662 ccgttttattgggatttcttccgcaaagaggattaaatttttgaaaaatccct-tttaaatccctacagtggtatcagagcttc-ggttatgattaaatc 19925565  T
Q  204 att 206  Q
    |||    
T  19925564 att 19925562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 20579438 - 20579275
Alignment:
Q  5 tatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc 104  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20579438 tatttcttctacaaaggttctactcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatc 20579339  T
Q  105 cgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccct 168  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  20579338 cgtttcaatgggatttcttccgcaaagaggattaaatttttgaaaaacccctcttaaaatccct 20579275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 8859374 - 8859540
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859374 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 8859473  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa-cccctctcaaaatcccttca 171  Q
    |||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||    
T  8859474 gtttcaatgggatttctttcggaaagaggattaaaattttgaaaaaccccctcttaaaatcccttca 8859540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 18270253 - 18270419
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18270253 atatttcttctataaaggttctgctcgtcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 18270352  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttg-aaaaacccctctcaaaatccctt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  18270353 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaacccctcttaaaatccctt 18270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 55613890 - 55614055
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  55613890 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttttatttgatttgtgattaatgatttaatcaagatcc 55613989  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  55613990 gtttcaatgggatttcttccgtaaagaggatttaaattttgaaaaacccctcttaaaatcccttca 55614055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 26971654 - 26971811
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26971654 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcggtttcaa 26971753  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  26971754 tgggatttcttccgc--agaggattaaaattttgaaaaacccctcttaaaatcccttcag 26971811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 869801 - 869968
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  869801 atatttcttctacaaatgttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 869900  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||| |||||| ||||||||||||    
T  869901 ccgtttcaataggatttcttccgcaaagagaattaaatttttgaaaaatccctcttaaaatcccttca 869968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 19919533 - 19919381
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919533 atatttcttctacaaaggttgtgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 19919434  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccct 156  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  19919433 ccgtttcattgggatttcttccgcaaagaggattaaatttttgaaaaatccct 19919381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 10825352 - 10825188
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| ||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10825352 atttctgctacagaggttctgctcttcaagaggtaaacacatgaat--taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatct 10825255  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10825254 gtttcaatgggatttattccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcag 10825188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 10676582 - 10676370
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaaga-tccg-tttc 110  Q
    |||||||| |||| |||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  10676582 ctacaaaggttcttctcttcaagaggtaaacacatgaattcgtaagtgtttaagtttgtgtttgatttgtgattaatgatttaatcaagattccgttttc 10676483  T
Q  111 aatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca--gtggtatcagagcttctggttctgattaaatc-atta 207  Q
    |||||||||| |||||| ||||||||||||| ||||||||| ||||||  |||||||||||  |||||||||||||  ||||||||||||||||| ||||    
T  10676482 aatgggatttgttccgctaagaggattaaaaatttgaaaaaaccctctttaaatcccttcaatgtggtatcagagc--ctggttctgattaaatcaatta 10676385  T
Q  208 attcaattctgtttg 222  Q
    |||||| ||||||||    
T  10676384 attcaaatctgtttg 10676370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 10890222 - 10890010
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaaga-tccg-tttc 110  Q
    |||||||| |||| |||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  10890222 ctacaaaggttcttctcttcaagaggtaaacacatgaattcgtaagtgtttaagtttgtgtttgatttgtgattaatgatttaatcaagattccgttttc 10890123  T
Q  111 aatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca--gtggtatcagagcttctggttctgattaaatc-atta 207  Q
    |||||||||| |||||| ||||||||||||| ||||||||| ||||||  |||||||||||  |||||||||||||  ||||||||||||||||| ||||    
T  10890122 aatgggatttgttccgctaagaggattaaaaatttgaaaaaaccctctttaaatcccttcaatgtggtatcagagc--ctggttctgattaaatcaatta 10890025  T
Q  208 attcaattctgtttg 222  Q
    |||||| ||||||||    
T  10890024 attcaaatctgtttg 10890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 5667192 - 5667043
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg 106  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  5667192 ttctactacaaaggttctgctcttcaagaggtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccg 5667093  T
Q  107 tttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccct 156  Q
    |||||||  ||||||||||||| |||| ||||||||||||||||| ||||    
T  5667092 tttcaataagatttcttccgcagagagcattaaaattttgaaaaatccct 5667043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 47387948 - 47387788
Alignment:
Q  13 ctacaaagattctgctcttcaaga-ggtaaacacatgaat-cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc 110  Q
    |||||||| ||||||||||||  | ||||||||||||||| |||||| || |||| | | |||| ||| |||||||||||||||||||||||||||||||    
T  47387948 ctacaaaggttctgctcttcatcaaggtaaacacatgaattcttaaattgcttaaatatgtgttagatgtgtgattaatgatttaatcaagatccgtttc 47387849  T
Q  111 aatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  47387848 aatgagatttcttccgcaaagaggattaaaattttgaaaaacccctcttgaaatcccttca 47387788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 4425642 - 4425468
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatga-------atcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaa 96  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4425642 atatttcttctacaaaagttcagctcttcaagaggtaaacacatgatgacataatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaa 4425543  T
Q  97 tcaagatccgtttcaatgggatttcttccgcaaagaggatta-aaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||| ||||||||| ||||| ||||||  ||||||||| ||| ||||||||||| ||||  |||||||||||    
T  4425542 tcaagatctgtttcaatgagatttgttccgcttagaggattataaaatttgaaaaacctctct-taaatcccttca 4425468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 35224741 - 35224903
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc-- 110  Q
    |||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||      
T  35224741 ctacaaaatttctgcgcttcaagaggtaaacacatgaat-ttaaagtgtttaagtttgtgtttgatttgtgattgatgatttaatcaagatccgtttcat 35224839  T
Q  111 ---aatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
       |||||||||| |||||   ||||||||||||||||||||| |||||||  |||||||||||    
T  35224840 tttaatgggatttattccgttgagaggattaaaattttgaaaaccccctcttgaaatcccttca 35224903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 10627415 - 10627240
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagttt-ctgtttgatttgtgattaatgatttaatcaagatc 104  Q
    |||||| ||||| || |||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||||||||||||||         
T  10627415 atttctgctacagaggttctgctcttcaagaggtaaacacatgaa------agtgtttaagttttctgtttgatttgtgattaatgatttaatca----- 10627327  T
Q  105 cgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatca 204  Q
                 |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  10627326 -------------tttcttacgcaaa-aggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagcttc-ggttatgattaaatca 10627242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 27031782 - 27031816
Alignment:
Q  33 aagaggtaaacacatgaatcttaaagtgtttaagt 67  Q
    |||||||||||||||||||||||||||||||||||    
T  27031782 aagaggtaaacacatgaatcttaaagtgtttaagt 27031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 55992914 - 55992971
Alignment:
Q  92 tttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaa 149  Q
    |||||||||||||||||| |||| ||||| ||  || |||||||||||||||||||||    
T  55992914 tttaatcaagatccgttttaatgagatttgttttgctaagaggattaaaattttgaaa 55992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 49066009 - 49066044
Alignment:
Q  74 ttgatttgtgattaatgatttaatcaagatccgttt 109  Q
    |||||||||||||||||||||||||||||| |||||    
T  49066009 ttgatttgtgattaatgatttaatcaagattcgttt 49066044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 10578357 - 10578132
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578357 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 10578258  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccctt-cagtggtatcagagcttctggttctgattaaatca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| | |||||||||    
T  10578257 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttccagtggtatcagagcatctggttttcattaaatca 10578158  T
Q  205 tta-attcaattctgtttgatgcata 229  Q
    ||| |||| | |||||| ||||||||    
T  10578157 ttatattcgaatctgttcgatgcata 10578132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 15606454 - 15606254
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15606454 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 15606355  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| | ||||||||||    
T  15606354 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagcatccggttatcattaaatcat 15606255  T
Q  206 t 206  Q
    |    
T  15606254 t 15606254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 13212480 - 13212686
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13212480 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 13212579  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||   ||||| ||||| ||||||||||    
T  13212580 ccgtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaactcctcttaaaatcccttcagtggtat---agcttttggttatgattaaatc 13212676  T
Q  204 attaattcaa 213  Q
    |||| |||||    
T  13212677 attagttcaa 13212686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 15599909 - 15599742
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599909 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 15599810  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15599809 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagt 15599742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 8491564 - 8491731
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8491564 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 8491663  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  8491664 ccgtttcaatgggatttcttccgcaaagaggattaaatttttgaaaaacccctcttaaaatcccttca 8491731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 6111280 - 6111446
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6111280 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaacat 6111379  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  6111380 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa-ccctcttaaaatcccttca 6111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 13258725 - 13258892
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13258725 atatttcttctacaaaggttctactcttcaagaggtaaacacatgaatcttaaaatgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 13258824  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  13258825 ccgtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaacccctcttaaaatcccttca 13258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 15356613 - 15356408
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15356613 atattttttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagat 15356514  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaa 201  Q
    ||||||||||| ||||| ||||||  |||||||  |||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  15356513 ccgtttcaatgagatttgttccgcttagaggattataaaatttggaaaaacctctcttaaaatcccttcagtggtatcagagcatctggttctggttaaa 15356414  T
Q  202 tcatta 207  Q
    ||||||    
T  15356413 tcatta 15356408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 10571591 - 10571427
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaa-gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc 104  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10571591 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc 10571492  T
Q  105 cgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccctt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10571491 cgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatccctt 10571427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 13517989 - 13518156
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13517989 atatttcttctacaaaggttctgcttttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagat 13518088  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  13518089 ccgtttcaatgggatttcttctgcaaagaggaataaaattttgaaaaacccctcttaaaatcccttca 13518156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 13691871 - 13692029
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13691871 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtatgatttgtgattaatgatttaatcaagatccgtttcaa 13691970  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13691971 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttcaaatcccttca 13692029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 17780190 - 17780025
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17780190 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatctttaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 17780091  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  17780090 ccgtttc-atgggatttcttccgcaaagaggattaaaattttg-aaaacccctcttaaaatcccttca 17780025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 19081491 - 19081326
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19081491 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatctttaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 19081392  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19081391 ccgtttc-atgggatttcttccgcaaagaggattaaaattttg-aaaacccctcttaaaatcccttca 19081326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 16481483 - 16481318
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  16481483 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttttatttgatttgtgattaatgatttaatcaagatcc 16481384  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  16481383 gtttcaatgggatttcttccgtaaagaggatttaaattttgaaaaacccctcttaaaatcccttca 16481318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 18534826 - 18534984
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18534826 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaa 18534925  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    || ||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||    
T  18534926 tgagatttcttctgtaaagaggattaaaattttgaaaaatccctcttaaaatcccttca 18534984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 15341246 - 15341077
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15341246 atattttttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgattgatttgtgattaatgatttaatcaagat 15341147  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||| ||||||  |||||||  |||||||| |||||||| |||| ||||||||||||    
T  15341146 ccgtttcaatgggatttgttccgcttagaggattataaaatttggaaaaacctctcttaaaatcccttca 15341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 1646523 - 1646367
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646523 atatttattctacaaaggttctgctcttcaagaggtaaacacattaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 1646424  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctct 158  Q
    ||||||||||||||||| |||||| ||||||||  ||||||||||||||||| ||||    
T  1646423 ccgtttcaatgggatttgttccgctaagaggattataaaattttgaaaaacctctct 1646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 18538177 - 18538342
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18538177 atttctgctacaaaggttctgctcttcaagagataaacacatgaatcttaaagtgtttaagtttctatttaatttgtgattaatgatttaatcaagatcc 18538276  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||| | |||| ||||||||||||    
T  18538277 gtttcaatgagatttcttctgtaaagaggattaaaattttgaaaaatctctcttaaaatcccttca 18538342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 32055433 - 32055274
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  32055433 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttcaatttctatttgatttgtgattaatgatttaatcaagatccgtttcaa 32055334  T
Q  113 tgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||| ||||||||||||||||||||  ||||||||||||||||| ||||  |||||||||||    
T  32055333 tggaatttcttccgcaaagaggattataaaattttgaaaaacctctct-taaatcccttca 32055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 23014370 - 23014214
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23014370 atatttcttatacaaaggttctgttcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 23014271  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctct 158  Q
      |||||||||||| || |||||| ||||||||  ||||||||||||||||| ||||    
T  23014270 atgtttcaatgggaattgttccgctaagaggattataaaattttgaaaaacctctct 23014214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 12564395 - 12564493
Alignment:
Q  73 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  12564395 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaacccctcttaaaatcccttca 12564493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 16201408 - 16201566
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||| ||||| | ||||||||||||| | ||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||  |    
T  16201408 ctacaaaggttctactctttaggaggtaaacacattactcttaaaatgtttaagtttttgtttgatttgtgagtaatgatttaatcaagattcgttttca 16201507  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||| ||| |||||||||||||||||||||||||  ||| ||| ||||||||    
T  16201508 tgggatttctttcgctaagaggattaaaattttgaaaaacctttcttaaattcccttca 16201566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 6288288 - 6288184
Alignment:
Q  61 tttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctca 160  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||| ||  | ||||| |||  | |||||||||||||||||||||||||||| | |    
T  6288288 tttaagttgttgtttaatttgtgattaatgatttaatcaagatccgtt-catcgagatttattctactaagaggattaaaattttgaaaaacccctttta 6288190  T
Q  161 aaatcc 166  Q
    ||||||    
T  6288189 aaatcc 6288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 17196749 - 17196702
Alignment:
Q  58 gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  17196749 gtgtttaagtttttgtttgatttgtgattaatgatttaatcaagatcc 17196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 25801443 - 25801508
Alignment:
Q  107 tttcaatgggatttcttccgcaaagaggattaaaattttg-aaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||||||||  |||||||||||    
T  25801443 tttcaatgggatttgttccactaagaggattaaaattttgaaaaaacccctctttaaatcccttca 25801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 25801377 - 25801436
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagt 67  Q
    |||| |||||||| || ||| |||||||||||||||||||||||||| || |||||||||    
T  25801377 ttctgctacaaaggttatgcgcttcaagaggtaaacacatgaatctttaaatgtttaagt 25801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 47699607 - 47699511
Alignment:
Q  71 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaa-acccctctcaaaatccc 167  Q
    |||||||||| |||||||||| |||||||||| |||| | | ||| |||| |||| | |||||||||||||||| ||||| ||||||||  |||||||    
T  47699607 tgtttgatttatgattaatgacttaatcaagacccgtct-attggaatttattcctctaagaggattaaaatttggaaaatacccctcttgaaatccc 47699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 12950 - 12742
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12950 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 12851  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaa-ttttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatca 204  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  12850 gttttaatgggatttcttccgcaaagaggattaaaatttttgaaaaacctctctcaaaatccctacagtggtatcagagcttttggttatgattaaatca 12751  T
Q  205 ttaattcaa 213  Q
    ||| |||||    
T  12750 ttagttcaa 12742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 5934 - 5811
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5934 atttctgctacaaaggttctgctcttcaggaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaataatttaatcaagatcc 5835  T
Q  106 gtttcaatgggatttcttccgcaa 129  Q
    |||| |||||||||||||||||||    
T  5834 gttttaatgggatttcttccgcaa 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 3897 - 4103
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3897 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 3996  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatc 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||   ||||| ||||| ||||||||||    
T  3997 ccgtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaactcctcttaaaatcccttcagtggtat---agcttttggttatgattaaatc 4093  T
Q  204 attaattcaa 213  Q
    |||| |||||    
T  4094 attagttcaa 4103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 5223 - 5025
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5223 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 5124  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaat 202  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||| ||||||| |||||||||    
T  5123 ccgtttcattgggatttcttccgcaaagaggattaaaattttaaaaaacccctctaaatatcccatcagtggtatcagagcatctggttgtgattaaat 5025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 29209 - 29010
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29209 atttctgctacaaaggttctgctcttcaagaggtaaacac--gaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 29112  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  29111 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcagagcttc-ggttgtgattgaatcat 29013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 18253210 - 18253388
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18253210 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaataatttaatcaagat 18253309  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcaga 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18253310 ccgtttcaatgggatttcttctgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagtggtatcaga 18253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 18531540 - 18531376
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18531540 atatttcttctacaaaggttctactcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 18531441  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccct 168  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  18531440 ccgtttcattgggatttcttccgcaaagaggattaaaattttgaaaaatccctcttaaaatccct 18531376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 27130415 - 27130257
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27130415 ctacaaaggttctgctcttcaagaggtaatcacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 27130316  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  27130315 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcctttca 27130257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 27309580 - 27309410
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27309580 atatttcttctacaaaggttttgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaatat 27309481  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa-cccctctcaaaatcccttcagt 173  Q
      |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  27309480 ttgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaaccccctcttaaaatcccttcagt 27309410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 16358060 - 16357904
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16358060 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaaatttctgtttgatttgtgattaatgatttaatcaagat 16357961  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctct 158  Q
    ||||||||||| ||||| |||||| ||||||||  ||||||||||||||||| ||||    
T  16357960 ccgtttcaatgagatttgttccgctaagaggattataaaattttgaaaaacctctct 16357904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 21169436 - 21169283
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||    
T  21169436 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaaa---------------tttctgtttgatttgtgattaatgatttaatcaagat 21169352  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaa-acccctctcaaaatcccttca 171  Q
    || |||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||    
T  21169351 ccttttcaatgggatttcttccgcaaagaggatcaaaattttgaaaacccccctcttaaaatcccttca 21169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 9075900 - 9075750
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||                |||||||||||||||||  ||||||||||| ||||    
T  9075900 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatcgtaa----------------tttgatttgtgattaattctttaatcaagacccgt 9075817  T
Q  108 ttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    ||||||| ||||| |||||| ||||||||  ||||||||||||||||||||||  ||||||||||||    
T  9075816 ttcaatgagatttgttccgctaagaggattataaaattttgaaaaacccctctttaaatcccttcag 9075750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 22640874 - 22640728
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttg-----atttgtgattaatgatttaatcaaga 102  Q
    |||| |||||||| |||||  |||||||||||||||||||||  |||||||||||||||| | |||||      |||| |||||||||||||||||||||    
T  22640874 ttctgctacaaaggttctgtgcttcaagaggtaaacacatgatccttaaagtgtttaagtatgtgttttgattaatttatgattaatgatttaatcaaga 22640775  T
Q  103 tccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaa 150  Q
    ||| ||| |||||||||| |||||| |||| |||||||||||||||||    
T  22640774 tccattttaatgggatttgttccgctaaga-gattaaaattttgaaaa 22640728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 25662281 - 25662370
Alignment:
Q  73 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaa 163  Q
    |||||||||||||||||||||||||||| ||||| ||||  ||||||| |||||| || |  || ||||||||||||||||||||| ||||    
T  25662281 tttgatttgtgattaatgatttaatcaatatccg-ttcatcgggatttattccgctaacaaaatgaaaattttgaaaaacccctcttaaaa 25662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 10155097 - 10155031
Alignment:
Q  142 ttttgaaa-aacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcatta 207  Q
    |||||||| ||||||||| | ||||||| ||| ||||||| ||| | ||||||||||||||||||||    
T  10155097 ttttgaaagaacccctcttacaatccctacagcggtatcatagcatttggttctgattaaatcatta 10155031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 11542005 - 11541810
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11542005 atttctactacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatcc 11541906  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaat 202  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  11541905 gtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaaaccctcttaaaatcccttcagtggtatcagagcttc-ggttgtgattaaat 11541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 29328968 - 29329135
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29328968 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaaatgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 29329067  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  29329068 ccgtttcaatgggatttcttctgcaaagaggattaaaattttgaaaatcccctcttaaaatcccttca 29329135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 2653013 - 2652852
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2653013 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatcc 2652914  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccc 167  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  2652913 gtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaacccctcttaaaatccc 2652852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 12752039 - 12752206
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  12752039 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctttttgatttttgattaatgatttaattaagat 12752138  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  12752139 ccgtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaacccctcttaaaatccattca 12752206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 15153654 - 15153817
Alignment:
Q  11 ttctacaaagattctgctcttcaagaggtaaacacatgaatctt-aaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgttt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  15153654 ttctacaaaggttctgctcttcaagaggtaaacacatgaatctttaaagtgtttaaatttctgtttgatttgtgagtaatgatttaatcaagatccgttt 15153753  T
Q  110 caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15153754 caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcagt 15153817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 12739722 - 12739922
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12739722 atatttcttctacaaaggttctgctcttcaagaggtaaacac--gaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 12739819  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttg-aaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaat 202  Q
    |||||||||| ||||||||||||||||||| |||||||||| | |||||||||||| |||||||||| |||||||| ||||| | ||||| |||||||||    
T  12739820 ccgtttcaataggatttcttccgcaaagagaattaaaatttcgaaaaaacccctcttaaaatcccttaagtggtattagagcat-tggttgtgattaaat 12739918  T
Q  203 catt 206  Q
    ||||    
T  12739919 catt 12739922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 11535087 - 11534921
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  11535087 atttctactacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttatgattaatgatttaatcaagatcc 11534988  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttga-aaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  11534987 gtttcaatgggatttcttccgtaaagaggattaaaattttgaaaaaacccctcttaaaatcccttca 11534921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 11557199 - 11557062
Alignment:
Q  47 tgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttg 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||     
T  11557199 tgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttcttccgcaaagacggttaaaatttta 11557100  T
Q  147 aaaaacccctctcaaaatcccttcagtggtatcagagc 184  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  11557099 aaaaccccctcttaaaatcccttcagtggtatcagagc 11557062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 18562217 - 18562385
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-----ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaaga 102  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||     ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  18562217 ttctactacaaaggttctgctcttcaagaggtaaacaaatgaatccttaattaaagtgtttaagtatgtgtttgatttgtgattaatgatttaatcaaga 18562316  T
Q  103 tccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||    
T  18562317 tccgtttcaatgagatttcttcctcaaagagtattaaaattttgaaaaacccctcttaaaatcccttca 18562385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 9979012 - 9979174
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg 106  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||||||||||||||||    
T  9979012 ttctactacaaaggttctgctcttcaagaggaaaacacatgaatccttaaattatttaagtatgtgtttgatttgtgattaatgatttaatcaagatccg 9979111  T
Q  107 ttt-caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccct 168  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  9979112 ttttcaatgggatttcttccgcaaagaggattaaaattttcaaaaacccctcttaaaatccct 9979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 18256836 - 18256679
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatct-taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttca 111  Q
    |||||||  |||| |||||||||||| |||||||||||||  |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  18256836 ctacaaaagttcttctcttcaagaggcaaacacatgaatccctaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccgtttca 18256737  T
Q  112 atgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccctt 169  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||  |||||||||    
T  18256736 atgggatttgttccgctaagaggattaaatttttgaaaaacccctctttaaatccctt 18256679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 7748213 - 7748248
Alignment:
Q  73 tttgatttgtgattaatgatttaatcaagatccgtt 108  Q
    ||||||||||||||||||||||||||||||||||||    
T  7748213 tttgatttgtgattaatgatttaatcaagatccgtt 7748248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 22947697 - 22947653
Alignment:
Q  52 cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaa 96  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||    
T  22947697 cttaaagggtttaattatctgtttgatttgtgattaatgatttaa 22947653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 30926279 - 30926378
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaat-cttaaa-gtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||| |||||||| || |||  || |||||||||||||||| || |||||| |||| ||| | | ||||||||||| ||||||||||||||||| |||||    
T  30926279 ttctgctacaaaggttttgcgatttaagaggtaaacacatggatgcttaaaagtgtataaatatgtgtttgatttgcgattaatgatttaatcatgatcc 30926378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 30918034 - 30918068
Alignment:
Q  74 ttgatttgtgattaatgatttaatcaagatccgtt 108  Q
    |||||||||||||||||||||||||| ||||||||    
T  30918034 ttgatttgtgattaatgatttaatcatgatccgtt 30918068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 8288 - 8456
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8288 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgtttaatgatttaatcaagat 8387  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8388 tcgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctcttaaaatcccttcag 8456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 4420 - 4588
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 4519  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 172  Q
    ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||    
T  4520 ccgtttcaatgggatttattctataaagaggattaaaattttgaaaaacccctctcaaaatcccttcag 4588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 24694485 - 24694286
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24694485 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatcc 24694386  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcat 205  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||| |||||  ||||| |||||||||||||||||||| ||||| ||||||||||||    
T  24694385 gtttcaatgggatttcttccgtaaagaggattaaaatcatgaaaaacacctctttaaatctcttcagtggtatcagagctt-tggttgtgattaaatcat 24694287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 24701254 - 24701055
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24701254 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatcc 24701155  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaatcat 205  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||| |||||  ||||| |||||||||||||||||||| ||||| ||||||||||||    
T  24701154 gtttcaatgggatttcttccgtaaagaggattaaaatcatgaaaaacacctctttaaatctcttcagtggtatcagagctt-tggttgtgattaaatcat 24701056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 18565477 - 18565328
Alignment:
Q  11 ttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18565477 ttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttc 18565378  T
Q  111 aatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctct 158  Q
    |||||||||| |||||| ||||||||  ||||||||||||||||| ||||    
T  18565377 aatgggatttattccgctaagaggattataaaattttgaaaaacctctct 18565328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 19713508 - 19713396
Alignment:
Q  30 ttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgca 128  Q
    ||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19713508 ttcaagaggtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaataatttaatcaagatccgtttcaatgagatttcttccgca 19713409  T
Q  129 aagaggattaaaa 141  Q
    |||||||||||||    
T  19713408 aagaggattaaaa 19713396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 28718960 - 28718819
Alignment:
Q  29 cttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgc 127  Q
    |||||||||||||||||||||| | |||||| ||||||||||   ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||    
T  28718960 cttcaagaggtaaacacatgaacccttaaagcgtttaagtttggttttgatttgtgattaatgatttaatcaagattcgtttcaacgggatttgttctgc 28718861  T
Q  128 aaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
     ||||| ||| ||||||||||||| ||||||  |||||||||||    
T  28718860 caagagtatt-aaattttgaaaaa-ccctctttaaatcccttca 28718819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 39539713 - 39539880
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgttt--gatttgtgattaatgatttaatcaagatc 104  Q
    |||| |||||||| |||||| ||||||| | ||||| || ||||| ||||||||||||||| | || ||  |||||||||||||| ||||||||||||||    
T  39539713 ttctgctacaaaggttctgcacttcaagggataaactcaggaatccttaaagtgtttaagtatgtgcttatgatttgtgattaattatttaatcaagatc 39539812  T
Q  105 cgtttcaatgggatttcttccgcaaagaggattaaaatttt-gaaaaacccctctcaaaatcccttcag 172  Q
    |||||| ||| ||||| ||||   ||| ||||||||||||| || ||||||||||  ||||||||||||    
T  39539813 cgtttc-atgagatttgttccattaagcggattaaaattttcgataaacccctcttgaaatcccttcag 39539880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 938477 - 938385
Alignment:
Q  73 tttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccc 167  Q
    ||||||||||||||||||||||| |||| || |||||||||| |||||||||||| ||||  ||||||||||||||||||||| || ||||||||    
T  938477 tttgatttgtgattaatgattta-tcaa-attcgtttcaatgagatttcttccgctaagaaaattaaaattttgaaaaaccccccttaaaatccc 938385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 22546323 - 22546232
Alignment:
Q  71 tgtttgatttgtgattaatgatttaatcaagatccgtt-tcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaat 164  Q
    ||||||||||||||||||| |||||||||||||| ||| ||   ||||||| ||| || |||||||||||||||||||||||||||||| |||||    
T  22546323 tgtttgatttgtgattaataatttaatcaagatctgttctc---gggatttattctgctaagaggattaaaattttgaaaaacccctcttaaaat 22546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 17297953 - 17297875
Alignment:
Q  71 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa 151  Q
    |||||||||||||||||||||||||||||| ||||| |||| | | |||| |||||| |||||| ||||||||||||||||    
T  17297953 tgtttgatttgtgattaatgatttaatcaatatccg-ttcatttgaatttattccgccaagagg-ttaaaattttgaaaaa 17297875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 17314029 - 17313950
Alignment:
Q  71 tgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa 151  Q
    |||||||||||||||||||||||||||||| ||  | ||||   | |||| | |||| |||||||||||||||||||||||    
T  17314029 tgtttgatttgtgattaatgatttaatcaatatatg-ttcatctgaatttatcccgccaagaggattaaaattttgaaaaa 17313950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 305 - 472
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  305 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 404  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||    
T  405 ccgtttcaatgggatttcttcagaaaagaggattaaaattttgaaaaacccctcttaaaatcccttca 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 7666 - 7461
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7666 atattttttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctttttgatttgtgattaatgatttaatcaagat 7567  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagcttctggttctgattaaa 201  Q
    ||||||||||| ||||| ||||||  |||||||  |||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  7566 ccgtttcaatgtgatttgttccgcttagaggattataaaatttggaaaaacctctcttaaaatcccttcagtggtatcagagcatctggttctggttaaa 7467  T
Q  202 tcatta 207  Q
    ||||||    
T  7466 tcatta 7461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 19493 - 19660
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19493 atatttcttctacaaagattgtgctcttcaaaaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 19592  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  19593 ccgtttcaatgggatttcttccgcaaagaggattaaatttttgaaaaactcctcttaaaatcccttca 19660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 26402 - 26557
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26402 ctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatccgtttcaa 26501  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccct 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  26502 tgggatttcttccgtaaagaggattaaaattttgaaaaacccctcttaaaacccct 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 6095326 - 6095492
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||    
T  6095326 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtatttaaatttctatttgattagtgattaatgatttaatcaagat 6095425  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  6095426 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaa-ccctcttaaaatcccttca 6095492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 15327403 - 15327569
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  15327403 atatttcttctacaaaggttcagctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaatat 15327502  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  15327503 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacctctct-taaatcccttca 15327569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 15507772 - 15507938
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  15507772 atatttcttctacaaaggttcagctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaatat 15507871  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  15507872 ccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacctctct-taaatcccttca 15507938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 21941849 - 21942012
Alignment:
Q  6 atttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatcc 105  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21941849 atttctgctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagatcc 21941948  T
Q  106 gtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatccctt 169  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21941949 gtttcaatgagattttttccgcatagaggattaaaattttgaaaaacccctcttaaaatccctt 21942012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 28549232 - 28549364
Alignment:
Q  22 ttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28549232 ttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgagatttc 28549331  T
Q  122 ttccgcaaagaggattaaaattttgaaaaaccc 154  Q
    |||||||||||||||||||||| ||||||||||    
T  28549332 ttccgcaaagaggattaaaattgtgaaaaaccc 28549364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 22172665 - 22172836
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22172665 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttatgattaatgatttaatcaagat 22172764  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttg--aaaaacccctctcaaaatcccttca 171  Q
    ||||||||||||||||| |||||| ||| ||||  ||||||||||  ||||||| |||| ||||||||||||    
T  22172765 ccgtttcaatgggatttgttccgctaagcggattataaaattttgaaaaaaacctctcttaaaatcccttca 22172836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 24644128 - 24644263
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24644128 atatttgttatacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctatttgatttgtgattaatgatttaatcaagat 24644227  T
Q  104 ccg-tttcaatgggatttcttccgcaaagaggatta 138  Q
    ||| ||||||||| |||| |||||| ||||||||||    
T  24644228 ccgttttcaatggaatttgttccgctaagaggatta 24644263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 24796005 - 24795853
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaa-gtttctgtttgatttgtgattaatgatttaatcaagatccgttt-c 110  Q
    |||||||| || ||| |||||||| |||||||||||||||   |||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |    
T  24796005 ctacaaaggttatgcgcttcaagacgtaaacacatgaatcc--aagtgtttaaagtttgtgtttgatttgtgattaatgatttaatgaaaatccgttttc 24795908  T
Q  111 aatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatc 165  Q
    ||||  |||| |||||| |||||||||||||||||||| ||||||||| ||||||    
T  24795907 aatgaaatttgttccgctaagaggattaaaattttgaataacccctcttaaaatc 24795853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 29230589 - 29230706
Alignment:
Q  54 taaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacc 153  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||| |||| |||||||||||| ||||| |    
T  29230589 taaaatgtttaagtttgtgtttgatttgtgattgatgatttaatcaagatctgtttcaatgagatttattccgctaagatgattaaaattttaaaaaaac 29230688  T
Q  154 cctctcaaaatcccttca 171  Q
    |||||  |||||||||||    
T  29230689 cctcttgaaatcccttca 29230706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 27660795 - 27660698
Alignment:
Q  75 tgatttgtgattaatgatttaatcaagatccgttt-caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||    
T  27660795 tgatttgtgataaatgatttaatcaagattcattttcaatgggatttcttccgctaagaggattaaaattttgaaaaacctctcttaaaatcctttca 27660698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 22790860 - 22790703
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22790860 atatttcttctacaaaggttctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttttgtttgatttgtgattaatgatttaatcaagat 22790761  T
Q  104 ccgtttcaatgggatttcttccgcaaagaggat--taaaattttgaaaaacccctctc 159  Q
    |  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  22790760 caatttcaatgggatttcttccgcaaagaggattataaaattttgaaaaacccctctc 22790703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 18621020 - 18621184
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaat-cttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg 106  Q
    |||| ||| |||| || |||| |||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||| ||||||||||||||||    
T  18621020 ttctgctataaaggttatgcttttcaagaggtaaacacatgaattcttaaattgtttaactatgtgtttgatttgtgattaatcatttaatcaagatccg 18621119  T
Q  107 tttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  18621120 tttcaatgagatttattccgcaaagaggattaaaattttgaaaaacccttcttaaaatcccttca 18621184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 41664949 - 41665115
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacat--gaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc 104  Q
    |||| |||||||  ||||||||||||||||||||||||||  ||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  41664949 ttctactacaaatgttctgctcttcaagaggtaaacacatatgaatccttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatc 41665048  T
Q  105 cgtttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    | ||| ||||  |||| || ||| ||||||||||||||||| ||||| ||||||  |||||||||||    
T  41665049 cattttaatgatatttgttacgctaagaggattaaaattttaaaaaagccctctttaaatcccttca 41665115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 27353547 - 27353685
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc-----cgt 107  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||           ||||||||||||||||||||||||     |||    
T  27353547 ctacaaagattctgcgcttcaagaggtaaacacat-aatcttaaagtgtttatgttt-----------gtgattaatgatttaatcaagatctgtttcgt 27353634  T
Q  108 ttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctct 158  Q
    |||||||| |||| |||||| ||||| ||||||||||||||||||||||||    
T  27353635 ttcaatggaatttgttccgctaagagaattaaaattttgaaaaacccctct 27353685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 12298996 - 12299072
Alignment:
Q  29 cttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatc 104  Q
    ||||||| |||||||||||||||  ||||||||||||||| | | ||  |||| ||||||||||| |||||||||||    
T  12298996 cttcaaggggtaaacacatgaatgattaaagtgtttaagtatgtattatatttatgattaatgatataatcaagatc 12299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 229404 - 229197
Alignment:
Q  14 tacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgat---ttaatcaagatccgttt 109  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| ||   ||||||||||| |||||    
T  229404 tacaaaggttctgctcttctagaggtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaataataatttaatcaagattcgttt 229305  T
Q  110 caatgggatttcttccgcaaagaggattaaaattttgaaaaacccctct-caaaatcccttcagtggtatcagagcttctggttctgattaaatcatta- 207  Q
    |||||  |||||||||||||||||||||||||||| |||||| ||||||   |||||||||||||||||||||||||| | ||| ||||||||||||||     
T  229304 caatgaaatttcttccgcaaagaggattaaaatttggaaaaaaccctctattaaatcccttcagtggtatcagagcttttagttttgattaaatcattac 229205  T
Q  208 attcaatt 215  Q
    ||||||||    
T  229204 attcaatt 229197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 6712 - 6863
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg 106  Q
    |||| |||||||| ||||||||||  || |||||||||||||||| || || ||||||||| | ||||||||| |||||||||||||||||||||||||     
T  6712 ttctactacaaaggttctgctctttgagtggtaaacacatgaatcctttaattgtttaagtatgtgtttgattggtgattaatgatttaatcaagatcca 6811  T
Q  107 tttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctct 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6812 tttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctct 6863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 1008 - 892
Alignment:
Q  4 atatttcttctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagat 103  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  1008 atatttcttctacaaaggttctgttcttcaagaggtaaacacatgaatcttgaagtgtttaagtttttgtttgatttgtgattaatgatttaagcaagat 909  T
Q  104 ccgtttcaatgggattt 120  Q
    || ||||||||||||||    
T  908 ccatttcaatgggattt 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 107270 - 107107
Alignment:
Q  8 ttcttctacaaagattctgctcttcaagaggtaaacacatgaatc-ttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccg 106  Q
    ||||||||||||| || |||||||| ||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  107270 ttcttctacaaaggttatgctcttccagaggtaaacacatgaatccttaaattgtttaagtatgtgtttgatttgtgattaatgatttaatcaagatccg 107171  T
Q  107 tttcaatgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    ||| |||||||||| || ||| |||| ||||||| |||||||||||| ||||  |||||||||||    
T  107170 ttttaatgggatttgtttcgctaaga-gattaaatttttgaaaaacctctctttaaatcccttca 107107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 87900 - 88059
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatctt-aaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttca 111  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||| |||||| || | ||||||||| ||||| ||| |||||||||||||||||||||    
T  87900 ctacaaaggttctgctcttcaagaggtaaactcatgaatctttaaattgtttatgtatgtgtttgattagtgataaataatttaatcaagatccgtttca 87999  T
Q  112 atgggatttcttccgcaaagaggattaaaattttgaaaaacccctctcaaaatcccttca 171  Q
    |||  |||||||||||| |||||||||||  || ||||||||||||| ||||||||||||    
T  88000 atgaaatttcttccgcatagaggattaaagattggaaaaacccctcttaaaatcccttca 88059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 235 - 373
Alignment:
Q  13 ctacaaagattctgctcttcaagaggtaaacacatgaatcttaaagtgtttaagtttctgtttgatttgtgattaatgatttaatcaagatccgtttcaa 112  Q
    |||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||    | |||||||| ||||||||||||||||||||||||| |||||    
T  235 ctacaaaggttctactcttcaagagataaacacatgaattttaaagtgtttaagaacatttttgatttttgattaatgatttaatcaagatccgattcaa 334  T
Q  113 tgggatttcttccgcaaagaggattaaaattttgaaaaa 151  Q
    |||||||| ||| ||  ||||||||||||||||||||||    
T  335 tgggatttattctgctgagaggattaaaattttgaaaaa 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1383 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1383
Description:

Target: scaffold1383; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 4 - 51
Alignment:
Q  137 taaaattttgaaaaacccctctcaaaatcccttcagtggtatcagagc 184  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  4 taaaattttgaaaaacctctcttaaaatcccttcagtggtatcagagc 51  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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