View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21070_high_1 (Length: 1218)
Name: NF21070_high_1
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 285 - 861
Target Start/End: Original strand, 13878786 - 13879344
Alignment:
| Q |
285 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaaaagaaaagttatctatctattacctttggtgctaattaaaactttgta |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878786 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaagtgaaaagttatctatctattacctttggtgctaattaaaactttgta |
13878885 |
T |
|
| Q |
385 |
tgtcctgtcgccaccatatatttgtttagcatgcacctgaaaattaaaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattt |
484 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878886 |
tgtcctgtcgccaccatatattggttta------------------aaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattt |
13878967 |
T |
|
| Q |
485 |
tcaatgatcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtggatcgcaacaaa |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13878968 |
tcaatgatcttttctaacagctctaaatttaatgcagcaagcagttatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtcgatcgcaacaaa |
13879067 |
T |
|
| Q |
585 |
atagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaa |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879068 |
atagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaa |
13879167 |
T |
|
| Q |
685 |
ttaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatt |
784 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879168 |
ttaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatt |
13879267 |
T |
|
| Q |
785 |
taaaatagtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgag |
861 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13879268 |
taaaatagtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgag |
13879344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 923 - 1208
Target Start/End: Original strand, 13879406 - 13879691
Alignment:
| Q |
923 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
1022 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
|
| Q |
1023 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
1122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
13879605 |
T |
|
| Q |
1123 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgttgttgttgttgttg |
1208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
13879606 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatcgttgttgttgttg |
13879691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 923 - 1195
Target Start/End: Original strand, 13875189 - 13875461
Alignment:
| Q |
923 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
1022 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
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| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
|
| Q |
1023 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
1122 |
Q |
| |
|
|| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcga |
13875388 |
T |
|
| Q |
1123 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
1195 |
Q |
| |
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| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| || |||||||| |
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| T |
13875389 |
ccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 78 - 282
Target Start/End: Original strand, 13874427 - 13874629
Alignment:
| Q |
78 |
gatcagttgatagtcccgtaaaacagttaaaagttaaatgatcgatgctatcaatgttatgattagacaagctaacaagcaatttatgg-caatagaatg |
176 |
Q |
| |
|
||||| |||||||||||||||||| || ||| ||||||||| | |||||||| ||||||| ||||||| | ||| |||||||| |||||||||| |
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|
| T |
13874427 |
gatcacttgatagtcccgtaaaaccattgaaaattaaatgat----gttatcaatgctatgatttgacaagccagcaaaatatttatgggcaatagaatg |
13874522 |
T |
|
| Q |
177 |
aatgagaattactaagaacttcacaagtgtagtgatcacttggtcctgtaaacacaattaacaacg-aaatgaggccattaatcacttgtagtggtaagg |
275 |
Q |
| |
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|||||||||||| ||||||||||||||||| | |||||||| |||| |||||||||||||||||| ||||||||||||| |||||||| || |||||| |
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| T |
13874523 |
aatgagaattaccaagaacttcacaagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgatcacttgacgttgtaagg |
13874622 |
T |
|
| Q |
276 |
aaaaata |
282 |
Q |
| |
|
| ||||| |
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|
| T |
13874623 |
acaaata |
13874629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 13874737 - 13874799
Alignment:
| Q |
491 |
atcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaata |
553 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
13874737 |
atcttttctaacagctctaagtataatgcagcaagcaattatgtgtgtacgcttcaatcaata |
13874799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 13884475 - 13884566
Alignment:
| Q |
176 |
gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaatcacttgtagtg |
269 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| ||||| |||| |
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| T |
13884475 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cccataaacacaattaacaaggaaatgaagccattaattacttgcagtg |
13884566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 13872183 - 13872260
Alignment:
| Q |
176 |
gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccatt |
255 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||| ||||||| |
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|
| T |
13872183 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaaggaaatggggccatt |
13872260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 645 - 683
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
645 |
taatcatatatttataatattgattgatagcaattggta |
683 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 12957723 - 12957643
Alignment:
| Q |
176 |
gaatgagaattactaagaacttcacaa-gtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaat |
258 |
Q |
| |
|
|||||| |||||| |||||||||| || ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| |
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|
| T |
12957723 |
gaatgacaattaccaagaacttcaaaaagtgtagtaatcactt---cccataaacacaattaacaaggaaatgaggccattaat |
12957643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 13871990 - 13872045
Alignment:
| Q |
3 |
ttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattcagcaatacatta |
58 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
13871990 |
ttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacatta |
13872045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 725 - 806
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
725 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
806 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| || ||||||| | |||||||||||| |||||||| |||| |
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| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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