View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_high_14 (Length: 316)

Name: NF21070_high_14
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_high_14
NF21070_high_14
[»] chr1 (1 HSPs)
chr1 (1-296)||(35696741-35697036)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 35697036 - 35696741
Alignment:
Q  1 cagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35697036 cagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattcacc 35696937  T
Q  101 accgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgcttggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  35696936 accgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgcttggca 35696837  T
Q  201 tcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35696836 tcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatc 35696741  T

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