View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_high_18 (Length: 260)

Name: NF21070_high_18
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_high_18
NF21070_high_18
[»] chr3 (21 HSPs)
chr3 (3-109)||(25886185-25886291)
chr3 (1-103)||(53825748-53825850)
chr3 (1-109)||(6463149-6463257)
chr3 (7-103)||(39415504-39415600)
chr3 (1-103)||(42948916-42949018)
chr3 (16-105)||(48086999-48087088)
chr3 (1-109)||(6755541-6755649)
chr3 (18-109)||(25744971-25745063)
chr3 (16-109)||(32211278-32211367)
chr3 (7-66)||(7955505-7955564)
chr3 (17-102)||(25574986-25575071)
chr3 (16-105)||(35485563-35485652)
chr3 (16-105)||(42947682-42947771)
chr3 (17-88)||(53824626-53824697)
chr3 (1-109)||(14995340-14995448)
chr3 (10-103)||(2324043-2324136)
chr3 (24-105)||(8628587-8628668)
chr3 (7-105)||(47560205-47560298)
chr3 (7-88)||(44833761-44833842)
chr3 (16-88)||(16967654-16967726)
chr3 (7-88)||(42993850-42993933)
[»] chr5 (24 HSPs)
chr5 (1-109)||(9883733-9883841)
chr5 (16-105)||(19044044-19044133)
chr5 (9-71)||(10399111-10399173)
chr5 (22-105)||(28784605-28784688)
chr5 (7-105)||(25898794-25898892)
chr5 (7-105)||(41758544-41758642)
chr5 (16-109)||(11125624-11125717)
chr5 (1-64)||(19401725-19401788)
chr5 (7-105)||(16101033-16101131)
chr5 (1-102)||(4845486-4845587)
chr5 (1-67)||(3460116-3460182)
chr5 (7-109)||(3461245-3461347)
chr5 (1-103)||(40014168-40014269)
chr5 (16-105)||(6427439-6427528)
chr5 (16-105)||(22706445-22706534)
chr5 (27-105)||(10532929-10533007)
chr5 (7-105)||(40017015-40017113)
chr5 (16-105)||(1974473-1974562)
chr5 (7-76)||(6270954-6271023)
chr5 (7-75)||(20202514-20202582)
chr5 (14-105)||(1172774-1172865)
chr5 (22-105)||(7083815-7083898)
chr5 (26-109)||(36310560-36310642)
chr5 (7-88)||(39223078-39223159)
[»] chr1 (28 HSPs)
chr1 (1-108)||(23602780-23602887)
chr1 (1-103)||(45690433-45690536)
chr1 (1-103)||(27034205-27034307)
chr1 (1-99)||(50066983-50067080)
chr1 (1-102)||(5766648-5766749)
chr1 (22-105)||(41871889-41871972)
chr1 (7-105)||(49597348-49597446)
chr1 (16-105)||(9343633-9343722)
chr1 (16-105)||(48566914-48567003)
chr1 (5-109)||(5767433-5767536)
chr1 (5-91)||(47486787-47486873)
chr1 (16-105)||(11012294-11012383)
chr1 (7-73)||(6086475-6086541)
chr1 (1-105)||(21483063-21483164)
chr1 (1-105)||(30308503-30308604)
chr1 (1-105)||(39222859-39222960)
chr1 (7-105)||(47485706-47485804)
chr1 (11-105)||(50065781-50065875)
chr1 (18-70)||(3782092-3782144)
chr1 (1-105)||(3660006-3660107)
chr1 (1-105)||(46923935-46924036)
chr1 (7-88)||(18171796-18171877)
chr1 (7-103)||(46178799-46178894)
chr1 (23-109)||(26013527-26013614)
chr1 (15-109)||(18843817-18843911)
chr1 (12-109)||(47983825-47983922)
chr1 (7-92)||(27033100-27033185)
chr1 (27-76)||(39650543-39650592)
[»] chr4 (35 HSPs)
chr4 (16-109)||(13867646-13867739)
chr4 (1-108)||(49261608-49261715)
chr4 (15-108)||(40221100-40221193)
chr4 (1-104)||(372831-372934)
chr4 (16-109)||(13855924-13856017)
chr4 (16-105)||(31936164-31936253)
chr4 (1-101)||(33163148-33163248)
chr4 (1-103)||(46815256-46815359)
chr4 (16-109)||(14990150-14990242)
chr4 (19-108)||(18414019-18414108)
chr4 (1-105)||(42039173-42039277)
chr4 (27-105)||(2778112-2778190)
chr4 (1-103)||(53267273-53267375)
chr4 (1-65)||(36173111-36173175)
chr4 (10-109)||(24607989-24608088)
chr4 (22-109)||(40962538-40962625)
chr4 (16-105)||(49065387-49065476)
chr4 (7-105)||(16524912-16525010)
chr4 (27-105)||(46814169-46814247)
chr4 (7-105)||(47043651-47043749)
chr4 (16-105)||(32935843-32935932)
chr4 (16-105)||(46567418-46567507)
chr4 (16-79)||(886870-886933)
chr4 (16-105)||(38131595-38131684)
chr4 (46-105)||(31823166-31823225)
chr4 (7-106)||(36174241-36174340)
chr4 (7-105)||(1227769-1227867)
chr4 (1-71)||(3394657-3394727)
chr4 (17-79)||(14329168-14329230)
chr4 (1-105)||(21712994-21713095)
chr4 (1-38)||(17212582-17212619)
chr4 (22-88)||(33161965-33162031)
chr4 (7-60)||(27760973-27761026)
chr4 (7-105)||(28796938-28797038)
chr4 (45-105)||(53266089-53266149)
[»] chr7 (20 HSPs)
chr7 (16-108)||(2913147-2913239)
chr7 (10-109)||(8725795-8725894)
chr7 (1-103)||(20377811-20377913)
chr7 (3-103)||(48219593-48219693)
chr7 (1-103)||(26500969-26501070)
chr7 (1-103)||(26591643-26591744)
chr7 (16-105)||(41219216-41219305)
chr7 (1-108)||(21613177-21613282)
chr7 (7-76)||(18239259-18239328)
chr7 (16-105)||(37523997-37524086)
chr7 (7-105)||(1536908-1537006)
chr7 (22-92)||(21153926-21153996)
chr7 (7-88)||(48218491-48218572)
chr7 (7-105)||(29714456-29714554)
chr7 (16-105)||(34354254-34354343)
chr7 (19-105)||(8261038-8261124)
chr7 (7-105)||(31825890-31825988)
chr7 (31-88)||(26502116-26502173)
chr7 (31-88)||(26590541-26590598)
chr7 (7-75)||(38791196-38791264)
[»] scaffold0223 (1 HSPs)
scaffold0223 (16-106)||(15921-16011)
[»] chr8 (11 HSPs)
chr8 (1-108)||(43835150-43835257)
chr8 (1-103)||(43636496-43636598)
chr8 (2-71)||(3964184-3964253)
chr8 (7-105)||(34471424-34471522)
chr8 (16-92)||(28704173-28704249)
chr8 (5-68)||(33775422-33775485)
chr8 (7-105)||(4639925-4640023)
chr8 (7-105)||(43635426-43635524)
chr8 (1-108)||(1931503-1931610)
chr8 (16-105)||(10829644-10829733)
chr8 (22-76)||(23542589-23542643)
[»] scaffold1700 (1 HSPs)
scaffold1700 (1-103)||(953-1055)
[»] chr2 (14 HSPs)
chr2 (7-105)||(25685885-25685983)
chr2 (1-103)||(22494643-22494745)
chr2 (22-105)||(24937244-24937327)
chr2 (1-109)||(8556390-8556495)
chr2 (32-105)||(13785201-13785274)
chr2 (16-109)||(16710087-16710180)
chr2 (7-105)||(29132466-29132564)
chr2 (7-88)||(12967554-12967635)
chr2 (22-71)||(20149444-20149493)
chr2 (7-105)||(18394625-18394723)
chr2 (7-88)||(2155101-2155182)
chr2 (7-79)||(22495736-22495808)
chr2 (27-88)||(42121697-42121758)
chr2 (29-105)||(11713276-11713352)
[»] chr6 (11 HSPs)
chr6 (1-71)||(23912064-23912136)
chr6 (7-103)||(35054742-35054838)
chr6 (7-105)||(14153671-14153769)
chr6 (10-88)||(35053641-35053719)
chr6 (16-105)||(319381-319470)
chr6 (18-105)||(11718492-11718579)
chr6 (7-105)||(13312747-13312845)
chr6 (7-76)||(14830738-14830807)
chr6 (16-105)||(16444584-16444673)
chr6 (45-103)||(9400180-9400238)
chr6 (34-88)||(14481873-14481927)
[»] scaffold0861 (1 HSPs)
scaffold0861 (16-105)||(3551-3639)
[»] scaffold1455 (1 HSPs)
scaffold1455 (7-87)||(36-116)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 25886291 - 25886185
Alignment:
Q  3 tgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaa 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  25886291 tgaggaggagagtgagagtgtgagatggtgtgaggaaatggagaagtttggagggatatttataggtgggaatgataagataggttataactaccataaa 25886192  T
Q  103 tgtagtc 109  Q
    |||||||    
T  25886191 tgtagtc 25886185  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 53825850 - 53825748
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  53825850 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 53825751  T
Q  101 aat 103  Q
    |||    
T  53825750 aat 53825748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6463257 - 6463149
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||| || | ||  || |||| |||||||||| ||||||||    
T  6463257 agtgaggatgagagtgagaatgtgagatggtgtgaggaaatggggaagtttagaggtgtatttttaaggggagattgtaaaataggttatatctaccata 6463158  T
Q  101 aatgtagtc 109  Q
    ||| |||||    
T  6463157 aatatagtc 6463149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 39415600 - 39415504
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaat 103  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  39415600 gaggagggggagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaat 39415504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 42949018 - 42948916
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| ||  || |||  |||||||||| ||||||||    
T  42949018 agtgaggaggagggtgagaatatgagatggtgtgaggaaatggggaagtttagaggtgtatttatagggggagattgtagcataggttatatctaccata 42948919  T
Q  101 aat 103  Q
    |||    
T  42948918 aat 42948916  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 48087088 - 48086999
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||   ||||||||| | |||||||||||    
T  48087088 gagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttatatccaccataaatgt 48086999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6755541 - 6755649
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||  |||||| |||  ||||||||||| ||  || |||| |||||||||| ||||||||    
T  6755541 agtgaggatgagagtgagaatatgagatggtgtgaggaaatgggaaagtttagagatgtatttatagggggagattgtaacataggttatatctaccata 6755640  T
Q  101 aatgtagtc 109  Q
    ||| |||||    
T  6755641 aatatagtc 6755649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 25744971 - 25745063
Alignment:
Q  18 gaatgtgagatggtgtgaggaaatggag-aagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||||||||||||||| || |||||| | ||||| ||||||||||||||| ||||||||  ||| |||||||||||||||||||||| |||||    
T  25744971 gaatgtgagatggtgtaagaaaatgggggaagttaggaggggtatttataagtgggaataataaaataggttataactaccataaatatagtc 25745063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 32211367 - 32211278
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||||| |||||| ||||||| ||||||| |||||||||    || |||||||||||  ||||||||||||||||||||||||||||    
T  32211367 gagaatgtgagatagtgtgaagaaatggggaagttttgaggggtat----agatgggaatggtagtataggttataactaccataaatgtagtc 32211278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 7955505 - 7955564
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttata 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  7955505 gaggagggtgagaatgtgagatggtgtgaggaaatggagaagtttagaggtgtatttata 7955564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 25575071 - 25574986
Alignment:
Q  17 agaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaa 102  Q
    |||| |||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||   || |||||||| ||||||||    
T  25575071 agaaagtgagatggtgtgaggaaatagggaagtatggaggagtatttataggtgggaatggtagtgtatgttataaccaccataaa 25574986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 35485652 - 35485563
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  35485652 gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 35485563  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 42947771 - 42947682
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  42947771 gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 42947682  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 53824697 - 53824626
Alignment:
Q  17 agaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  |||||||    
T  53824697 agaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggtt 53824626  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14995448 - 14995340
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||| |||||| |||| |||||||||||||||||| ||||||  || |||  ||| ||||||||||| ||  || |||| ||||||| || ||||||||    
T  14995448 agtgatgaggagggtgaaaatgtgagatggtgtgagaaaatgggaaattttataggtgtatttataggaggagattgtaacataggttgtatctaccata 14995349  T
Q  101 aatgtagtc 109  Q
    ||| |||||    
T  14995348 aatatagtc 14995340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 2324043 - 2324136
Alignment:
Q  10 gagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaat 103  Q
    ||||||||| | | ||||||||||||||||||||  |||||| |||| |||| |||||| ||  ||  ||| |||||||||| |||||||||||    
T  2324043 gagagtgaggaggagagatggtgtgaggaaatgggaaagtttagaggtgtatatatagggggagattataacataggttatatctaccataaat 2324136  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 8628668 - 8628587
Alignment:
Q  24 gagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| ||||||| |||| | ||||| ||||||| |||||||||||||||||||||  ||||||| ||| || ||| |||||    
T  8628668 gagatagtgtgagtaaatagggaagtatggagggatatttataggtgggaatggtagtataggttgtaaatatcattaatgt 8628587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 47560205 - 47560298
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||| ||||||| | ||||| |||||||||||     |||||||||||||   ||||||||||| |||||||||||    
T  47560205 gaggagggagagaaagtgatatggtgtaaggaaatagggaagtatggaggggtat-----ggtgggaatggtagtctaggttataaccaccataaatgt 47560298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 44833842 - 44833761
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||| ||||||||||||||  |||||||  |||||||    
T  44833842 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggagcggtatttataggtgcaaatggtagtataggtt 44833761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 16967654 - 16967726
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    ||||| |||| || |||||| ||| | | ||||| ||||||||||||||||| |||||||||||  |||||||    
T  16967654 gagaaagtgatattgtgtgacgaattagggaagtatggaggggtatttatagatgggaatggtagtataggtt 16967726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 42993933 - 42993850
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatt--tataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||||||||  ||||||||| |||||||  |||||||    
T  42993933 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttatataggtggaaatggtagtataggtt 42993850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9883733 - 9883841
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||    
T  9883733 agtgaggaggagagtgagaatgtgagatggtgtgagaaaatggggaagtttggaggggtatttataggtatgaatggtaacataggttataagtaccata 9883832  T
Q  101 aatgtagtc 109  Q
    |||||||||    
T  9883833 aatgtagtc 9883841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 19044133 - 19044044
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||    
T  19044133 gagaatgtgagatggtgtgagaaaatggggaagtttggaggggtatttataggtgggaatgataacataggttataaatacaataaatgt 19044044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 10399111 - 10399173
Alignment:
Q  9 ggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgg 71  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10399111 ggagagtgagaatgtgagatggtgtgaggaaatggggaagtttggaggggtatttataggtgg 10399173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28784605 - 28784688
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||    
T  28784605 gtgatatggtgtgaggaaatagagaagtatggaggggtatttataggtgggaatagtaatataagttataacaaccataaatgt 28784688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 25898892 - 25898794
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| |||||||||| |||| | ||||| |||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  25898892 gaggagggagagaaagtgatatggtgtgagaaaatagggaagtatggaggggtatttataggtgggaatggtagtataggttataaccaccataaatgt 25898794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 41758544 - 41758642
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||   ||||||||||| |||||||||||    
T  41758544 gaggagggggagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgagaatggtagtgtaggttataaccaccataaatgt 41758642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 11125624 - 11125717
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||||| |||| ||||||||  ||||||||||||| |||||||||||||||||| ||  ||||| |||||||||||||| |||||||    
T  11125624 gagaatgtgagatagtgtcaggaaatgaggaagtttggagggatatttataggtgggaatgatagtataggatataactaccataagtgtagtc 11125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19401725 - 19401788
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtattta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  19401725 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaattttagaggtgtattta 19401788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 16101131 - 16101033
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||  |  |||||||||||||||| |||||||    
T  16101131 gaggagggagagaaagtgatatggtgtgaggaaatagagaagtatggaggggtatttataggtgagaatgacagtataggttataactaccgtaaatgt 16101033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4845486 - 4845587
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||| ||||| ||||||||||  |||||| |||| ||||||||||| ||  || ||||  ||||||||| ||||||||    
T  4845486 agtgaggaggagagtgagaatgtgagttggtgcgaggaaatgggaaagtttagaggtgtatttatagggggagattgtaacgtaggttatatctaccata 4845585  T
Q  101 aa 102  Q
    ||    
T  4845586 aa 4845587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3460116 - 3460182
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttatag 67  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||    
T  3460116 agtggggaggagagtgagaatgtgagttggtgtgaggaaatggggaagtttagaggtgtatttatag 3460182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 3461245 - 3461347
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgta 106  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| ||||||    
T  3461245 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgta 3461344  T
Q  107 gtc 109  Q
    |||    
T  3461345 gtc 3461347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40014168 - 40014269
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||| ||||||||| | ||| || |||| ||| |||||| ||||||||    
T  40014168 agtgaggaggagagtgagaatgtgagttggtgtgaggaaacgggaaagtttagaggtgtatttata-gaggggattgtaacatatgttatatctaccata 40014266  T
Q  101 aat 103  Q
    |||    
T  40014267 aat 40014269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 6427528 - 6427439
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||| ||| ||| |||||| |||||    
T  6427528 gagaaagtgagatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataagttgtaaataccattaatgt 6427439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 22706445 - 22706534
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||||||  ||| |||||||||| ||||||| ||| |||||| |||||    
T  22706445 gagaaagtgagatggtgtgaggaattagagaagtatggaggggtatttaagggtaggaatggtaatataggttgtaaataccattaatgt 22706534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 10533007 - 10532929
Alignment:
Q  27 atggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||  |||||||  ||||||||||| |||||| |||||    
T  10533007 atggtgtgaggaaatagggaagtatggaggggtatttataggtgaaaatggtagtataggttataaataccattaatgt 10532929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 40017015 - 40017113
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  40017015 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 40017113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 1974562 - 1974473
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| |||||||||| || | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  1974562 gagaaagtgatatggtgtgagaaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 1974473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 6271023 - 6270954
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatg 76  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  6271023 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatg 6270954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20202514 - 20202582
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaat 75  Q
    |||||| | ||||| |||| |||||||||| |||| | ||||| |||||||||||||||||||||||||    
T  20202514 gaggagggagagaaagtgatatggtgtgagaaaatagggaagtatggaggggtatttataggtgggaat 20202582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 1172774 - 1172865
Alignment:
Q  14 gtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||| ||||||||||||||||||   |  |||| ||||||| |||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  1172774 gtgagaaagtgagatggtgtgaggaataaggtaagtatggagggatatttataggtgggaatggtagtataggttgtaaacaccattaatgt 1172865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 7083815 - 7083898
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||||||||||||  | | ||||| ||||||| |||||||||||||||||||||  ||||||| ||| || ||| |||||    
T  7083815 gtgagatggtgtgaggagttagggaagtatggagggatatttataggtgggaatggtagtataggttgtaaatatcattaatgt 7083898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 36310642 - 36310560
Alignment:
Q  26 gatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||| |||||| |||| |||||||| |||||||||| ||||||||||| ||| ||| |||||||  |||||| ||||    
T  36310642 gatggtgtgagaaaatggtgaaggttggagggatatttatagg-gggaatggtaacataagttttaactacactaaatgcagtc 36310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 39223159 - 39223078
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||| ||||||||||||| |   ||||| ||||||||||||||||||||| |||||||  |||||||    
T  39223159 gaggagggggagaaagtgatatggtgtgaggaattacggaagtatggaggggtatttataggtggaaatggtagtataggtt 39223078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23602780 - 23602887
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  23602780 agtgaggaggagagtgagaatatgaaatggtgtgaggaaatggggaagtttagagggatatttataggtgagaatggtaacataggttataactaccata 23602879  T
Q  101 aatgtagt 108  Q
    ||| ||||    
T  23602880 aatctagt 23602887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45690433 - 45690536
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtggga-atggtaagataggttataactaccat 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||| |||| || |||| |||||||||| |||||||    
T  45690433 agtgaggaggagagtgagaatgtgagatgatgtgaggaaatggggaagtttagaggtgtatttataggggggagattgtaacataggttatatctaccat 45690532  T
Q  100 aaat 103  Q
    ||||    
T  45690533 aaat 45690536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27034307 - 27034205
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  27034307 agtgaggaggagagtgggaatggaagatggtgtgaggaaatggagaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 27034208  T
Q  101 aat 103  Q
    |||    
T  27034207 aat 27034205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 50067080 - 50066983
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||| ||| || |||| |||||||||| |||||||    
T  50067080 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggggaagtttagagatgtatttatagg-ggggattgtaacataggttatatctaccat 50066983  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5766648 - 5766749
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||||||||||| | ||||||  ||||||||||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  5766648 agtgaggaggagagtgagaatgtgagatggtgtgtgaaaatgggaaagtttggaggtgtatttatagggggagattgtaacataggttatatctaccata 5766747  T
Q  101 aa 102  Q
    ||    
T  5766748 aa 5766749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 41871972 - 41871889
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  41871972 gtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 41871889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 49597446 - 49597348
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||    ||||||||||| |||||||||||    
T  49597446 gaggagggggagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatggtggtgtaggttataaccaccataaatgt 49597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 9343722 - 9343633
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||    
T  9343722 gagaaggtgatatggtgtgaggaaatagggaagtatggagggatatttataggtgggaatgatagtataggttataactaccataaatgt 9343633  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 48567003 - 48566914
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  48567003 gagaaagtgagatggtgtgaggaaatagggaaatatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 48566914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 5767433 - 5767536
Alignment:
Q  5 aggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatg 104  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||| | ||  || |||| |||||||||| |||||||||||     
T  5767433 aggaggagagtgagaatgtgagatggtgtgagaaaatggggaagtttggaagtgtatttata-gaggagattgtaacataggttatatctaccataaata 5767531  T
Q  105 tagtc 109  Q
    |||||    
T  5767532 tagtc 5767536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 47486873 - 47486787
Alignment:
Q  5 aggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttata 91  Q
    |||||||||||||||||||||| ||| ||||| |||||||||||||| |||| ||||||||||| ||  || |||| ||||||||||    
T  47486873 aggaggagagtgagaatgtgagttggagtgagaaaatggagaagtttagaggtgtatttatagggggagattgtaacataggttata 47486787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 11012383 - 11012294
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||||| | ||||| || | ||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  11012383 gagaaagtgatatggtgtgaggaaatagggaagtatgaaagggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 11012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 6086541 - 6086475
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtggga 73  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||| |||| ||||||||||| ||||    
T  6086541 gaggagagtgagaatgtgagatgttgtgaggaaatgaggaagtttagaggtgtatttatagggggga 6086475  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21483164 - 21483063
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||| ||||||||||||| | | ||||| |||||||||||||||| ||||||||||||  ||||||| ||| ||||||     
T  21483164 agtgaggaggag---gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttatatgtgggaatggtagtataggttgtaaataccatt 21483068  T
Q  101 aatgt 105  Q
    |||||    
T  21483067 aatgt 21483063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30308604 - 30308503
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||| ||||||||||| | | ||||| | |||||||||||||||||||||||||||  ||||||| ||| ||||||     
T  30308604 agtgaggaggag---gagaaagtgagaaggtgtgaggaattagggaagtattgaggggtatttataggtgggaatggtagtataggttgtaaataccatt 30308508  T
Q  101 aatgt 105  Q
    |||||    
T  30308507 aatgt 30308503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39222960 - 39222859
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||||||||||||||| | | ||||| |||||||||||||||| ||||||||||||  |||||||  || ||||||     
T  39222960 agtgaggaggag---gagaaagtgagatggtgtgaggaattagggaagtatggaggggtatttatacgtgggaatggtagtataggttgaaaataccatt 39222864  T
Q  101 aatgt 105  Q
    |||||    
T  39222863 aatgt 39222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 47485804 - 47485706
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  47485804 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 47485706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 50065875 - 50065781
Alignment:
Q  11 agagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||| ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  50065875 agagggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 50065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 3782144 - 3782092
Alignment:
Q  18 gaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtg 70  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  3782144 gaatgtgagatggtgtgagaaaatgaggaagtttggaggggtatttataggtg 3782092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3660006 - 3660107
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||||||| |||| || | | ||||| |||||| ||||||||||||||||||||||  ||||||| ||| ||||||     
T  3660006 agtgaggaggag---gagaaagtgagatggtatgagaaattagggaagtatggaggagtatttataggtgggaatggtagtataggttgtaaataccatt 3660102  T
Q  101 aatgt 105  Q
    |||||    
T  3660103 aatgt 3660107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46924036 - 46923935
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||||||||||||||| | | ||||| ||||| | |||||||||||||||||| ||  ||||||| ||| ||||||     
T  46924036 agtgaggaggag---gagaaagtgagatggtgtgaggaattagggaagtatggagagatatttataggtgggaatgatagtataggttgtaaataccatt 46923940  T
Q  101 aatgt 105  Q
    |||||    
T  46923939 aatgt 46923935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 18171796 - 18171877
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||||||||||||||||| | | ||||| ||||||| |||||||| ||||||||||||  |||||||    
T  18171796 gaggagggggagaaagtgagatggtgtgaggaattagggaagtatggagggatatttataagtgggaatggtagtataggtt 18171877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 46178894 - 46178799
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaat 103  Q
    |||||| | ||||| ||||||| |||||| ||||| | ||||| ||||||| ||||||||||||| |||||||   ||||||||||| |||||||||    
T  46178894 gaggagggggagaaagtgagatcgtgtgaagaaatagggaagtatggagggatatttataggtggaaatggtagtgtaggttataac-accataaat 46178799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 26013527 - 26013614
Alignment:
Q  23 tgagatggtgtgaggaaatggagaagtttggaggggta-tttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||||||||||| | ||||| ||||| |||| |||||||||| ||||| ||  ||| |||||||| | |||||||||||||    
T  26013527 tgagatggtgtgaggaaatagggaagtatggagaggtattttataggtgagaatgatagtataagttataacaaacataaatgtagtc 26013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 18843817 - 18843911
Alignment:
Q  15 tgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||| |||||||| |||||||||||||  | ||||| |||| ||||||||||| ||  || |||| |||| ||||| ||||||||||| |||||    
T  18843817 tgagattgtgagattgtgtgaggaaatgagggagtttagaggtgtatttatagggggagattgtaacatagattatatctaccataaatatagtc 18843911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 47983922 - 47983825
Alignment:
Q  12 gagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||||| ||||||||||| ||||||||||  | ||||||| |||| ||||||||| | ||  || |||| ||||||||||  |||||||||| |||||    
T  47983922 gagtgaaaatgtgagatgatgtgaggaaaatgggaagtttagaggtgtatttataaggggagattgtaacataggttatatttaccataaatatagtc 47983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 27033185 - 27033100
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataa 92  Q
    |||||| | ||||| |||| || || ||||||| | | ||||| |||||||||||||||||||| ||||| ||  |||||||||||    
T  27033185 gaggagggggagaaagtgatatcgtatgaggaattcgggaagtatggaggggtatttataggtgagaatgatagtataggttataa 27033100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 39650592 - 39650543
Alignment:
Q  27 atggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatg 76  Q
    ||||||||||||| | | ||||| || |||||||||||||||||||||||    
T  39650592 atggtgtgaggaattagggaagtatgaaggggtatttataggtgggaatg 39650543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 13867646 - 13867739
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  13867646 gagaatgtgagatggtgtgaggaaatggggaagtttggaggagtatttataggtgggaatggtaacataggttataactacaataaatatagtc 13867739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 49261608 - 49261715
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||| |||| ||| ||||| ||||| |||    
T  49261608 agtgaggaggagagtgagaatgtgagatgatgtgaggaaatgaggaagtttggagggatatttataggtgggaatagtaacatatgttatgactacaata 49261707  T
Q  101 aatgtagt 108  Q
    ||||||||    
T  49261708 aatgtagt 49261715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 40221193 - 40221100
Alignment:
Q  15 tgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagt 108  Q
    ||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  40221193 tgagaatgtgagatggtgtgaggaaatgaggaagtttggaggggcatttacaggtgggaatggtaacataggttataaataccataaatgtagt 40221100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 372934 - 372831
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||| | || ||| |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||    
T  372934 agtgaggaagtgaatgaaaatgtgagatggtgtgagaaaatggggaagtttggaggggaatttataggtgggaatggtaacatatgttataactacaata 372835  T
Q  101 aatg 104  Q
    ||||    
T  372834 aatg 372831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 13855924 - 13856017
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||    
T  13855924 gagaatgtgagatggtgtgaggaaatgaggaattttggagggatatttataggtgggaatggtaacataggttataactacaattaatatagtc 13856017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 31936164 - 31936253
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||| ||||||||||| | ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  31936164 gagaaagtgatatgctgtgaggaaatagggaagtatggaggggtatttataggtgagaatggtaatataggttataactaccataaatgt 31936253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33163248 - 33163148
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  33163248 agtgaggaggagagtgaaaatgtgagttggtgtgaggaaatggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 33163149  T
Q  101 a 101  Q
    |    
T  33163148 a 33163148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 46815359 - 46815256
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaag-tttggaggggtatttataggtgggaatggtaagataggttataactaccat 99  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||| ||||||||||| ||  || |||| |||||||||| |||||||    
T  46815359 agtgaggaggagagtgagaatgtgagttggtgtgaggaaatggggaagttttagaggtgtatttatagggggagattgtaacataggttatatctaccat 46815260  T
Q  100 aaat 103  Q
    ||||    
T  46815259 aaat 46815256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 14990150 - 14990242
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||| |||||||||||||| | |||||| |||||||||||||||||||||| ||| ||||||||  |||||||| |||||||||||||||||||    
T  14990150 gagagtgtgagatggtgtgggaaaatggggaagtttggaggggtatttataagtgagaatggtagtataggtta-aactaccataaatgtagtc 14990242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 18414019 - 18414108
Alignment:
Q  19 aatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagt 108  Q
    ||||||| ||| |||||| |||||  |||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  18414019 aatgtgaaatgatgtgagaaaatgaggaagtttggaggagtatatataggtgggaatgataacataggttataactaccataaatgtagt 18414108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42039277 - 42039173
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||| |||||| | ||||| |||| ||||||||||||||| ||||||| |||| |||||||||||||||||| |||||   ||||||||||| ||||||    
T  42039277 agtgatgaggagggagagaaagtgatatggtgtgaggaaatagagaagtatggatgggtatttataggtgggactggtagtgtaggttataaccaccata 42039178  T
Q  101 aatgt 105  Q
    |||||    
T  42039177 aatgt 42039173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 2778190 - 2778112
Alignment:
Q  27 atggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||||||| | ||||| || |||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  2778190 atggtgtgaggaaatagggaagtatgaaggggtatttgtaggtgggaatggtagtataggttataactaccataaatgt 2778112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 53267375 - 53267273
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||| ||| || ||||||||| |||||||| |||| ||||||||||| ||  || |||| |||||||||| |||||| |    
T  53267375 agtgaggaggagagtgagaatgtgaaatgctgcgaggaaatgaagaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccaca 53267276  T
Q  101 aat 103  Q
    |||    
T  53267275 aat 53267273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36173111 - 36173175
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttat 65  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  36173111 agtgaggaggagagtgggaatgtgagatggtgtgaggaaatggggaagtttagaggtgtatttat 36173175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 24607989 - 24608088
Alignment:
Q  10 gagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||| ||||||||||||||||||||||||||  || ||| |||||||||||||||  ||  || |||| |||||||||| ||||||||||| |||||    
T  24607989 gagagtgggaatgtgagatggtgtgaggaaatgggaaaatttagaggggtatttatagagggagattgtaacataggttatatctaccataaatatagtc 24608088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 40962538 - 40962625
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| | ||  || |||| |||||||||| ||||||||||| |||||    
T  40962538 gtgagatggtgtgaggaaatggggaagtttggaggtgtatttatatgaggagattgtaacataggttatatctaccataaatatagtc 40962625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 49065387 - 49065476
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||||||||||||||||||| | | ||||| |||| ||||||||||||||||||||||||  ||||||| ||| || ||| |||||    
T  49065387 gagaatgtgagatggtgtgaggaattagggaagtatggaagggtatttataggtgggaatggtagtataggttgtaaatatcattaatgt 49065476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 16524912 - 16525010
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||||| ||||||| || | |||||||||||||||| |||||||  ||| |||||||| | |||||||||    
T  16524912 gaggagggagagaaagtgatatggtgtgaggaaatagagaagtatgaaagggtatttataggtggaaatggtagtatatgttataacaatcataaatgt 16525010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 46814247 - 46814169
Alignment:
Q  27 atggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  46814247 atggtgtgaggaattagagaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 46814169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 47043651 - 47043749
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  47043651 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 47043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 32935932 - 32935843
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||| ||||||||| | | ||||| |||||||||||||||||||||||||||||  |||||||||||  ||||| |||||    
T  32935932 gagaaagtgatatgatgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttataaacaccattaatgt 32935843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 46567507 - 46567418
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| |||||||||||||||   ||||| |||||||||||||||| |||| |||||||   ||||||||||| |||||||||||    
T  46567507 gagaacgtgatatggtgtgaggaaatattgaagtatggaggggtatttataagtggaaatggtagtgtaggttataaccaccataaatgt 46567418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 886870 - 886933
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggta 79  Q
    ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||    
T  886870 gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggta 886933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 38131684 - 38131595
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| ||||||||||||||| |||| |  |||| |||||| |||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  38131684 gagaaagtgagatggtgtgagaaaataggtaagtatggaggagtatttataggtggaaatgatagtgtaggttataaccaccataaatgt 38131595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 31823225 - 31823166
Alignment:
Q  46 aagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||| |||||||||||||||||||||||||| ||   ||||||||||| |||||||||||    
T  31823225 aagtatggaggggtatttataggtgggaatgatagtgtaggttataaccaccataaatgt 31823166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 36174241 - 36174340
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgta 106  Q
    |||||| | ||||| |||| |||||||||| || |   ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| ||||||    
T  36174241 gaggagggggagaaagtgatatggtgtgagaaattatggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgta 36174340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 1227769 - 1227867
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | ||||||| || |||||||||||||||||| |||| ||  ||||||| |||  ||||| |||||    
T  1227769 gaggagggggagaaagtgatatggtgtgaggaattagagaagtatgaaggggtatttataggtggaaatgatagtataggttgtaaacaccattaatgt 1227867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3394657 - 3394727
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgg 71  Q
    |||||||||||||| | ||||||||||||||||||| |||    ||||| | |||||||||||||||||||    
T  3394657 agtgaggaggagagagggaatgtgagatggtgtgagaaaacaaggaagtattgaggggtatttataggtgg 3394727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 14329230 - 14329168
Alignment:
Q  17 agaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggta 79  Q
    |||| |||||||||||||||||| |   ||||| | |||||||||||||||||||||||||||    
T  14329230 agaaagtgagatggtgtgaggaattatggaagtatagaggggtatttataggtgggaatggta 14329168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21712994 - 21713095
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||||||| ||||||| | | ||||| || |||||||| ||||||||||||| |||  ||||||| ||| ||||||     
T  21712994 agtgaggaggag---gagaaagtgagatggtttgaggaattagggaagtatgaaggggtatatataggtgggaattgtagtataggttgtaaataccatt 21713090  T
Q  101 aatgt 105  Q
    |||||    
T  21713091 aatgt 21713095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17212582 - 17212619
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgagga 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17212582 agtgaggaggagaatgagaatgtgagatggtgtgagga 17212619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 33162031 - 33161965
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||| |||||||||| || | ||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  33162031 gtgatatggtgtgagaaattagagaagtatggaggggtatttataggtgagaaaggtagtataggtt 33161965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 27760973 - 27761026
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggta 60  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| ||||||||||    
T  27760973 gaggagggggagaaagtgagatggtgtgaggaaatagggaagtatggaggggta 27761026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 28797038 - 28796938
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagttt--ggaggggtatttataggtgggaatggtaagataggttataactaccataaatg 104  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |  |||||||||||||||||||| |||||||  ||||||| |||  ||||| ||||    
T  28797038 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatatggaggggtatttataggtggaaatggtagtataggttgtaaacaccattaatg 28796939  T
Q  105 t 105  Q
    |    
T  28796938 t 28796938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 53266149 - 53266089
Alignment:
Q  45 gaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| || ||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  53266149 gaagtatgaaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 53266089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 2913147 - 2913239
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagt 108  Q
    ||||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  2913147 gagaatgtgagatggtgtgagaaaatgtggaagtttggagggatatttataggtgagaatggtaatataggttataactaccataaatgtagt 2913239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 8725894 - 8725795
Alignment:
Q  10 gagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  8725894 gagagtgagaatgagagatggtgtgaggaaatgagaaagtttggaggggtatttataggttggaatgataacataggttataactacaataaatgtagtc 8725795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20377913 - 20377811
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  20377913 agtgaggaggagagtgagaatgtgagatggtgtgaagaaatgggaaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 20377814  T
Q  101 aat 103  Q
    |||    
T  20377813 aat 20377811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 48219693 - 48219593
Alignment:
Q  3 tgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtggga-atggtaagataggttataactaccataa 101  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| ||||| || |||| |||||||||| |||||||||    
T  48219693 tgaggaggagagtgagaatgcgagatggtgtgaggaaatggggaagtttagaggtgtatttatag-tgggagattgtaacataggttatatctaccataa 48219595  T
Q  102 at 103  Q
    ||    
T  48219594 at 48219593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 26500969 - 26501070
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  26500969 agtgaggaggagagtgagaatgtgagatg-tgtgaggaaattgggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 26501067  T
Q  101 aat 103  Q
    |||    
T  26501068 aat 26501070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26591744 - 26591643
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  26591744 agtgaggaggagagtgagaatgtgagatg-tgtgaggaaattgggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 26591646  T
Q  101 aat 103  Q
    |||    
T  26591645 aat 26591643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 41219216 - 41219305
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| ||||||||||||||| |||| | |||||  ||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  41219216 gagaaagtgagatggtgtgagaaaatagggaagtaaggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 41219305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21613282 - 21613177
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||| ||||||||||||||||||||||||  ||||| || ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  21613282 agtgaggaagagagtgagaatgtgagatggtgt--ggaaaaggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 21613185  T
Q  101 aatgtagt 108  Q
    ||| ||||    
T  21613184 aatatagt 21613177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 18239259 - 18239328
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatg 76  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  18239259 gaggagggggagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatg 18239328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 37523997 - 37524086
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| |||||||||| || | ||||||| |||||||||||||||||||||||||||||  ||||||| ||| |||||| |||||    
T  37523997 gagaaagtgatatggtgtgagaaattagagaagtatggaggggtatttataggtgggaatggtagtataggttttaaataccattaatgt 37524086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 1536908 - 1537006
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  1536908 gaggagggggagaaagtgacatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 1537006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 21153996 - 21153926
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataa 92  Q
    |||| ||||||||||||||| | ||||| |||||||||||||||||| ||||||||||  |||||||||||    
T  21153996 gtgatatggtgtgaggaaatagggaagtatggaggggtatttataggcgggaatggtagtataggttataa 21153926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 48218572 - 48218491
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||||||||||||||||| | | ||||| |||||||||||||||||||| ||||||||  |||||||    
T  48218572 gaggagggggagaaagtgagatggtgtgaggaattagggaagtatggaggggtatttataggtgagaatggtagtataggtt 48218491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 29714554 - 29714456
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| |||||||||||||||    |||| ||||||||||||||||||||||||||||   |||||||||| | |||||| ||||    
T  29714554 gaggagggagagaaagtgatatggtgtgaggaaataagaaagtatggaggggtatttataggtgggaatggtggtataggttatagcaaccatagatgt 29714456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 34354254 - 34354343
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| |||||    
T  34354254 gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgagaatggtagtataggttgtaaagaccattaatgt 34354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 8261124 - 8261038
Alignment:
Q  19 aatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||||||||||||||||| |  ||||||||   |||||||||||||| |||||| |||  ||| || || |||||||||||||    
T  8261124 aatgtgagatggtgtgaggaaaagaggaagtttgtgagggtatttataggtaggaatgataacctagtttgtatctaccataaatgt 8261038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 31825890 - 31825988
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| |||||||||| || | |  |||| ||||||||||||||||||||| |||||||  ||||||| |||  ||||| |||||    
T  31825890 gaggagggggagaaagtgatatggtgtgagaaattaggaaagtatggaggggtatttataggtggaaatggtagtataggttgtaaacaccattaatgt 31825988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 26502116 - 26502173
Alignment:
Q  31 tgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    ||||||||| | | ||||| |||||||||||||||||| ||||||||||  |||||||    
T  26502116 tgtgaggaattagggaagtatggaggggtatttataggggggaatggtagtataggtt 26502173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 26590598 - 26590541
Alignment:
Q  31 tgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    ||||||||| | | ||||| |||||||||||||||||| ||||||||||  |||||||    
T  26590598 tgtgaggaattagggaagtatggaggggtatttataggggggaatggtagtataggtt 26590541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 38791264 - 38791196
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaat 75  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||| |||||||||||| ||||    
T  38791264 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggagggatatttataggtgagaat 38791196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 15921 - 16011
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgta 106  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  15921 gagaatgtgagatggtgtgaggaaatgaggaagtttgaaggggtatttataggtgggaatggtagtataggttataactaccataagtgta 16011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 43835150 - 43835257
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |  |||||||||||||| ||||||||| ||| ||| ||||||| |||    
T  43835150 agtgaggaggagagtgagaatgttagatggtgtgaagaaatggggaagtttgcaaaggtatttataggtgagaatggtaacatatgttttaactacaata 43835249  T
Q  101 aatgtagt 108  Q
    ||||||||    
T  43835250 aatgtagt 43835257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43636598 - 43636496
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||| ||  || |||| |||||||||| ||||||||    
T  43636598 agtgaggaggagagtgagaatgtgagatggtgtgaggaaaaggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccata 43636499  T
Q  101 aat 103  Q
    |||    
T  43636498 aat 43636496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 3964253 - 3964184
Alignment:
Q  2 gtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgg 71  Q
    |||| |||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3964253 gtgatgaggagggtgagaatgtgagatggtgtgaggaaatgaggaagtttggaggggtatttataggtgg 3964184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 34471424 - 34471522
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||||||| ||||||||||| |  |||| |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  34471424 gaggagggggagaaagtgagatgatgtgaggaaataggaaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 34471522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 28704249 - 28704173
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataa 92  Q
    ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  |||||||||||    
T  28704249 gagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttataa 28704173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 33775485 - 33775422
Alignment:
Q  5 aggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttatagg 68  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||| |||| |||||||||||    
T  33775485 aggaggagagtgagaatgtgagttggtgtgaggaaatgaggaagtttagaggtgtatttatagg 33775422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 4640023 - 4639925
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||||||||||||||||||| |||||| ||||||| |||  ||||| |||||    
T  4640023 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggattggtaatataggttgtaaacaccatcaatgt 4639925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 43635524 - 43635426
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  43635524 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 43635426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1931610 - 1931503
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||| |||||||||| |  |||| |||||| |||||  ||||||||||||  |||||||||| ||  || |||| |||||||||| ||||| ||    
T  1931610 agtgaggaggggagtgagaatttttgatgatgtgagaaaatgtggaagtttggaggtatatttatagggggagattgtaacataggttatatctaccgta 1931511  T
Q  101 aatgtagt 108  Q
    ||| ||||    
T  1931510 aatatagt 1931503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 10829733 - 10829644
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||||||||||| | || || | |||||  ||||||||||||||||||||  ||||||||||| || ||| |||||    
T  10829733 gagaaagtgatatggtgtgaggaaatagggaggtatagagggaaatttataggtgggaatggtagtataggttataaatatcattaatgt 10829644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23542589 - 23542643
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatg 76  Q
    |||| ||| ||||||||| | | ||||| ||||||||||||||||||||||||||    
T  23542589 gtgatatgatgtgaggaattagggaagtatggaggggtatttataggtgggaatg 23542643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 953 - 1055
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||  |  || |||| |||||||||| ||||||||    
T  953 agtgaggaggagagtgagaatgtgagatgttgtgaggaaatggggaagtttagaggtgtatttatagggagagattgtaacataggttatatctaccata 1052  T
Q  101 aat 103  Q
    |||    
T  1053 aat 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 25685885 - 25685983
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  25685885 gaggagggagagaaagtgagatggtgtgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgt 25685983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 22494643 - 22494745
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    |||||||||||||||||||||||||| |||||||||||||||   |||||| |||| ||||||||||| ||  || || | |||||||||| ||||||||    
T  22494643 agtgaggaggagagtgagaatgtgagttggtgtgaggaaatgtgaaagtttagaggtgtatttataggaggagattgtgacataggttatatctaccata 22494742  T
Q  101 aat 103  Q
    |||    
T  22494743 aat 22494745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 24937244 - 24937327
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||||||| |||| | ||||| |||||||||||||||||||||||||| ||   ||||||||||| |||||||||||    
T  24937244 gtgagatggtgtgagaaaatagggaagtatggaggggtatttataggtgggaatgatagtgtaggttataaccaccataaatgt 24937327  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8556495 - 8556390
Alignment:
Q  1 agtgaggaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccata 100  Q
    ||||||||||||   ||||| |||||||| ||||||||| |   ||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||||     
T  8556495 agtgaggaggag---gagaaagtgagatgatgtgaggaattatggaagtatggaggggtatttataggtggaaatggtagtataggttataaataccatt 8556399  T
Q  101 aatgtagtc 109  Q
    |||||||||    
T  8556398 aatgtagtc 8556390  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13785274 - 13785201
Alignment:
Q  32 gtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||||| |  |||| |||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  13785274 gtgaggaaataggaaagtatggaggggtatttataggtgggaatggtagtataggttataaccaccataaatgt 13785201  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 16710087 - 16710180
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgtagtc 109  Q
    ||||||||||||||||||||||||||||  |||||| |||| ||||||||||| ||  || ||||  ||||||||| ||||||||||| |||||    
T  16710087 gagaatgtgagatggtgtgaggaaatgggaaagtttagaggtgtatttatagggggagattgtaacgtaggttatatctaccataaatatagtc 16710180  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 29132466 - 29132564
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||| ||||||||| | | ||||| |||||||||||||||||||||||||| ||| ||||||| ||| |||||| |||||    
T  29132466 gaggagggggagaaagtgatatgttgtgaggaattagggaagtatggaggggtatttataggtgggaatgataatataggttgtaaataccattaatgt 29132564  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 12967635 - 12967554
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||  |||||||    
T  12967635 gaggagggggagaaagtgatatggtgtgaggaattagtgaagtatggaggggtatttataggtgggaatggtagtataggtt 12967554  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 20149444 - 20149493
Alignment:
Q  22 gtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgg 71  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  20149444 gtgagaaggtgtgaggaaatggggaagtttggaggggtatttataggtgg 20149493  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 18394625 - 18394723
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||||||||||||||||| |||||||  ||||||| |||  ||||| |||||    
T  18394625 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtggaaatggtagtataggttgtaaacaccattaatgt 18394723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 2155101 - 2155182
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||| | ||||| |||||||||||||||||| | | ||||| || ||||||||||||||||| ||||||||  |||||||    
T  2155101 gaggagggggagaaagtgagatggtgtgaggaattagggaagtatgaaggggtatttataggtgagaatggtagtataggtt 2155182  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 22495736 - 22495808
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggta 79  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| || ||||||||||||||||||||||||||    
T  22495736 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatgaaggggtatttataggtgggaatggta 22495808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 42121697 - 42121758
Alignment:
Q  27 atggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    ||||||||||||| |   ||||| |||||||||||||||||||||||||||||  |||||||    
T  42121697 atggtgtgaggaattaaggaagtatggaggggtatttataggtgggaatggtagtataggtt 42121758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 11713352 - 11713276
Alignment:
Q  29 ggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||||||||| | | ||||  || ||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  11713352 ggtgtgaggaattagggaagcatgaaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 11713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23912064 - 23912136
Alignment:
Q  1 agtgaggaggagagtgaga--atgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgg 71  Q
    ||||||||| |||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23912064 agtgaggagtagagtgagagaatgtgagatggtgtgaggaaattgagaagtttggaggggtatttataggtgg 23912136  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 35054838 - 35054742
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaat 103  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||||  |  || |||| |||||||||| |||||||||||    
T  35054838 gaggagagtgagaatgtgagttggtgtgaggaaatggggaagtttagaggtgtatttatagggagagattgtaacataggttatatctaccataaat 35054742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 14153769 - 14153671
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| ||||||||||||| | | ||||| ||||||||||||||||||||||| |||||  ||||||| |||  ||||| |||||    
T  14153769 gaggagggggagaaagtgatatggtgtgaggaattagggaagtatggaggggtatttataggtgggagtggtagtataggttgtaaacaccattaatgt 14153671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 35053719 - 35053641
Alignment:
Q  10 gagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    ||||| ||||| |||| |||||||||| || | | ||||| |||||||||||||||||||||||||||||  |||||||    
T  35053719 gagagggagaaagtgatatggtgtgagcaattagggaagtatggaggggtatttataggtgggaatggtagtataggtt 35053641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 319470 - 319381
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| ||||||| ||||||| | |||||  ||||| |||||||||||||||||||||    ||||||||||| |||||||||||    
T  319470 gagaaagtgacatggtgtaaggaaatagggaagtacggaggtgtatttataggtgggaatggtggtgtaggttataaccaccataaatgt 319381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 11718492 - 11718579
Alignment:
Q  18 gaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||||| |||||||||| ||||   ||||| || ||||||||||||||||| ||||||||  ||| ||||||| |||||| |||||    
T  11718492 gaatgtgatatggtgtgagaaaataaggaagtatgaaggggtatttataggtgagaatggtagtataagttataaataccattaatgt 11718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 13312845 - 13312747
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    |||||| | ||||| |||| |||||||||| |||| |  |||| |||||| ||||||||| ||||||||||||   ||||||||||| | |||||||||    
T  13312845 gaggagggagagaaggtgatatggtgtgagaaaataggaaagtatggaggagtatttataagtgggaatggtagtttaggttataacaaacataaatgt 13312747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 14830807 - 14830738
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatg 76  Q
    |||||| | ||||| |||| ||||||||||||| |   ||||| ||||||||||||||||||||||||||    
T  14830807 gaggagggggagaaagtgatatggtgtgaggaattaaggaagtatggaggggtatttataggtgggaatg 14830738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 16444673 - 16444584
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||| |||||||||| || | | ||||| || ||||||||||||||||||||||||||  ||||||| |||  ||||| |||||    
T  16444673 gagaaagtgatatggtgtgagcaattagggaagtatgaaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgt 16444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 9400238 - 9400180
Alignment:
Q  45 gaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaat 103  Q
    |||||||||||| ||||||||||| ||  || |||| |||||||||| |||||||||||    
T  9400238 gaagtttggaggagtatttatagggggagattgtaacataggttatatctaccataaat 9400180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 14481873 - 14481927
Alignment:
Q  34 gaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggtt 88  Q
    |||||||||| |||| || |||||||||||||||  ||||||||||| |||||||    
T  14481873 gaggaaatggtgaaggtttgaggggtatttatagaggggaatggtaacataggtt 14481927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 3551 - 3639
Alignment:
Q  16 gagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggttataactaccataaatgt 105  Q
    ||||| |||||||||||||||||| | | ||||| ||||||||||||||||||| |||||||||  ||||||| ||| |||||| |||||    
T  3551 gagaaagtgagatggtgtgaggaattagggaagtatggaggggtatttataggt-ggaatggtagtataggttttaaataccattaatgt 3639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 36 - 116
Alignment:
Q  7 gaggagagtgagaatgtgagatggtgtgaggaaatggagaagtttggaggggtatttataggtgggaatggtaagataggt 87  Q
    |||||| | ||||| |||| ||||||||||||| | |  |||| |||||||||||||||||||||||||||||| ||||||    
T  36 gaggagggggagaaagtgatatggtgtgaggaattaggtaagtatggaggggtatttataggtgggaatggtaatataggt 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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