View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21070_high_8 (Length: 436)
Name: NF21070_high_8
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 35697017 - 35697443
Alignment:
| Q |
1 |
tgttggaccttcaccgtctgtggttgctgccgcgatagcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697017 |
tgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgttt |
35697116 |
T |
|
| Q |
101 |
gagaaatggccgccggagaaggacaatggcggggagatgtttaacacgaagatggaccggtggagacagaaagatataccccaggtttatgatcatttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
35697117 |
gagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatggaccggtggagacagatagatataccgcaggtttatgatcatttgg |
35697216 |
T |
|
| Q |
201 |
ggaataataataatgatagtgtgaagaaaactgggaaacaaacgaaagggaaaggtaaaggtaagcatcgaaggcaaggtagcggtttgttttcgtgctt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35697217 |
ggaataataataatggtagtgtgaagaaaactgggaaacaaacgaaagggaaaggtaaaggtaagaatcgaaggcaaggtagcggtttgttttcgtgctt |
35697316 |
T |
|
| Q |
301 |
tggaacagcattagggtgtgagatttcaataacttgtggagggggtaaccataagaagagtggtagcactaataagcctcgtgttgctgactctgaacta |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35697317 |
tggaacagcattagggtgtgagatttcgataacttgcggagggggtaaccataagaagagtggtagcactaataaacctcgtgttgctgactctgaacta |
35697416 |
T |
|
| Q |
401 |
acttatgaatcgtcttatatttgatga |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35697417 |
acttatgaatcgtcttatatttgatga |
35697443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University