View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21070_low_10 (Length: 418)
Name: NF21070_low_10
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 3639392 - 3639779
Alignment:
| Q |
18 |
aaagtatggtcgattaattcttctgcatgagcatcataagttgtagggcgaggcaagttgaggcctaaagctaggcgaagtctcaaagtgagcaaatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639392 |
aaagtatggtcgattaattcttctgcatgagcatcataagttgtagggcgaggcaagttgaggcctaaagctaggcgaagtctcaaagtgagcaaatcat |
3639491 |
T |
|
| Q |
118 |
aagatcatgtacaaatttgttggacgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctnnnnnnnccgcacaggatt |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3639492 |
aagatcatgtacaaatttgttggatgtcacagtgaaggtgaaaccataaaattagtaggctacataggaggctgaggtcctaaaaaaaccgcacaggatt |
3639591 |
T |
|
| Q |
218 |
ccggaaatacacatctgcacagagnnnnnnntcgtgtttttgtctgaaatacaccttcagacagcacaaaaactgtctgtttccgatatctactttcaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3639592 |
ccggaaatacacatctgcacagagaaaaaaatcgtgtttttgtctgaaatacaccttcagacagcacaaaaactg--tgtttccgatatctactttcaaa |
3639689 |
T |
|
| Q |
318 |
gtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639690 |
gtgctttcggtggtgggaaagttcctccctttgtgctagggtctccccagttgactattgtgaagcataattcttgtattcacttttcat |
3639779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University