View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_low_11 (Length: 376)

Name: NF21070_low_11
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_low_11
NF21070_low_11
[»] chr7 (13 HSPs)
chr7 (195-336)||(33382346-33382487)
chr7 (197-336)||(32745884-32746023)
chr7 (192-335)||(40474374-40474517)
chr7 (189-335)||(28681849-28681992)
chr7 (190-336)||(46400042-46400188)
chr7 (195-318)||(45920064-45920187)
chr7 (195-316)||(45067543-45067664)
chr7 (210-336)||(31845141-31845267)
chr7 (201-318)||(35086400-35086517)
chr7 (245-328)||(11353728-11353810)
chr7 (195-318)||(8550611-8550734)
chr7 (257-328)||(32030317-32030388)
chr7 (162-203)||(32747060-32747101)
[»] chr1 (14 HSPs)
chr1 (195-336)||(15649100-15649241)
chr1 (190-322)||(32132013-32132145)
chr1 (195-336)||(790094-790235)
chr1 (190-318)||(24186652-24186780)
chr1 (192-318)||(34387555-34387681)
chr1 (190-318)||(27842558-27842686)
chr1 (190-318)||(34393625-34393753)
chr1 (190-336)||(17305044-17305189)
chr1 (197-336)||(51236294-51236432)
chr1 (210-308)||(24918874-24918972)
chr1 (207-328)||(33376538-33376654)
chr1 (190-303)||(22871241-22871354)
chr1 (196-336)||(32000583-32000723)
chr1 (162-201)||(8066717-8066756)
[»] chr2 (7 HSPs)
chr2 (202-336)||(9623917-9624050)
chr2 (190-318)||(31365492-31365620)
chr2 (210-336)||(43177118-43177244)
chr2 (201-336)||(2153988-2154118)
chr2 (162-201)||(2152963-2153002)
chr2 (207-318)||(5270442-5270553)
chr2 (162-201)||(41193372-41193411)
[»] chr4 (18 HSPs)
chr4 (190-336)||(23516104-23516250)
chr4 (195-336)||(35653290-35653430)
chr4 (196-336)||(38935775-38935910)
chr4 (190-336)||(46171634-46171780)
chr4 (239-336)||(26463914-26464011)
chr4 (210-336)||(23393144-23393270)
chr4 (210-336)||(49706384-49706510)
chr4 (190-318)||(12389167-12389295)
chr4 (190-318)||(31879528-31879656)
chr4 (207-336)||(9117307-9117436)
chr4 (196-318)||(27510778-27510900)
chr4 (190-318)||(6582333-6582461)
chr4 (196-318)||(16048074-16048193)
chr4 (227-318)||(48995737-48995828)
chr4 (224-309)||(2736707-2736792)
chr4 (229-321)||(47996589-47996680)
chr4 (162-200)||(6583940-6583978)
chr4 (191-236)||(26460712-26460757)
[»] chr5 (9 HSPs)
chr5 (197-336)||(32955809-32955948)
chr5 (190-336)||(28747551-28747689)
chr5 (190-318)||(3523155-3523283)
chr5 (195-309)||(31069140-31069254)
chr5 (208-308)||(31508461-31508561)
chr5 (190-336)||(26818356-26818497)
chr5 (207-309)||(33062040-33062142)
chr5 (266-336)||(8465186-8465256)
chr5 (255-328)||(42545710-42545778)
[»] chr3 (21 HSPs)
chr3 (195-336)||(44773937-44774078)
chr3 (224-336)||(18021744-18021856)
chr3 (210-338)||(40292891-40293019)
chr3 (190-336)||(50309003-50309148)
chr3 (195-318)||(13857073-13857195)
chr3 (190-336)||(10222998-10223139)
chr3 (197-316)||(32863566-32863685)
chr3 (208-327)||(44416396-44416515)
chr3 (243-336)||(13840785-13840878)
chr3 (190-303)||(5938085-5938198)
chr3 (207-327)||(33639403-33639523)
chr3 (207-315)||(50303218-50303326)
chr3 (195-318)||(55325189-55325311)
chr3 (195-309)||(34122365-34122479)
chr3 (190-328)||(40929327-40929465)
chr3 (195-327)||(50328335-50328467)
chr3 (264-330)||(5293235-5293301)
chr3 (260-334)||(8600202-8600276)
chr3 (224-306)||(25639412-25639494)
chr3 (265-332)||(20254758-20254825)
chr3 (162-201)||(44772775-44772814)
[»] scaffold0488 (2 HSPs)
scaffold0488 (190-336)||(7364-7510)
scaffold0488 (153-201)||(6093-6142)
[»] chr8 (23 HSPs)
chr8 (190-336)||(19147544-19147690)
chr8 (190-318)||(33691658-33691786)
chr8 (190-318)||(10902988-10903116)
chr8 (1-87)||(33837416-33837501)
chr8 (210-336)||(4885470-4885596)
chr8 (196-328)||(26053596-26053728)
chr8 (210-336)||(21184068-21184194)
chr8 (190-280)||(17564448-17564538)
chr8 (195-317)||(42475672-42475789)
chr8 (197-293)||(19127329-19127425)
chr8 (224-327)||(10226777-10226881)
chr8 (207-318)||(40346963-40347074)
chr8 (196-336)||(14333949-14334078)
chr8 (212-333)||(40614641-40614762)
chr8 (254-318)||(27114944-27115008)
chr8 (263-327)||(33238103-33238167)
chr8 (139-201)||(10904464-10904527)
chr8 (246-305)||(28733984-28734043)
chr8 (263-308)||(13947149-13947194)
chr8 (195-318)||(15254947-15255070)
chr8 (162-201)||(33690399-33690438)
chr8 (162-197)||(36369864-36369899)
chr8 (190-266)||(8259099-8259175)
[»] chr6 (11 HSPs)
chr6 (223-336)||(27596507-27596620)
chr6 (190-318)||(17154294-17154422)
chr6 (190-318)||(33702565-33702688)
chr6 (195-318)||(23111312-23111435)
chr6 (201-318)||(29092773-29092890)
chr6 (189-318)||(12356342-12356471)
chr6 (210-318)||(29397942-29398049)
chr6 (245-328)||(8636143-8636226)
chr6 (139-201)||(27597388-27597451)
chr6 (196-316)||(1800909-1801029)
chr6 (162-198)||(33703832-33703868)
[»] scaffold0064 (1 HSPs)
scaffold0064 (190-318)||(54069-54197)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 33382487 - 33382346
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  33382487 cgaaccgtaattttgaaatggttcgggaaaaccgaaccgaatcgtttcaagtttgaagctaaccgaactgaaccaaagttatggtttggttaaccatttg 33382388  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  33382387 cttacctattaaccataccgaaccgaaccaaaacaaatattt 33382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 32745884 - 32746023
Alignment:
Q  197 aaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgct 296  Q
    |||||||||||||||||||||||| ||||  |||| |||| |||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||    
T  32745884 aaccgaaattttgaaatggttcggaaaaattgaaccgaaccgttttaagtttggagctaaccgaactgaaccaaagttatggtttggctaaccatttact 32745983  T
Q  297 tacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32745984 tacctattaaccataccgaaccgaaccaaaacaaatattt 32746023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 192 - 335
Target Start/End: Original strand, 40474374 - 40474517
Alignment:
Q  192 aatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccat 291  Q
    ||||||| |||||||||||||||||||||||||| | |||  |||||||||| |||  |||||||||||| ||||||||| |||||||||||||||||||    
T  40474374 aatcgaatcgaaattttgaaatggttcgggaaaatcaaaccaaactgtttcaggttgtgagctaaccgaactgaaccaaagttatggtttggttaaccat 40474473  T
Q  292 ttgcttacctattaaccgtaccgaaccgaaccaaaacaaatatt 335  Q
    |||||||| |||||||| ||||||||||||||||||||||||||    
T  40474474 ttgcttacttattaaccataccgaaccgaaccaaaacaaatatt 40474517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 28681849 - 28681992
Alignment:
Q  189 acgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaac 288  Q
    ||||| ||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  28681849 acgaaccgaactgaaattttgaaatggtttgggaaaatcgaactgaaccgtttcaagtttggatctaaccgaactgaaccaaagttatggtttggttaac 28681948  T
Q  289 catttgcttacctattaaccgtaccgaaccgaaccaaaacaaatatt 335  Q
    |||||||||||||||||||| ||   | | |||||||||||||||||    
T  28681949 catttgcttacctattaaccata---agctgaaccaaaacaaatatt 28681992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 46400042 - 46400188
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||| || | |||||||||||||| ||||| |||| |||| |||| |||||||||  ||||| || ||||||||| |||||||| ||||||||    
T  46400042 cgaaccgaaccaaagtgttgaaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaacc 46400141  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  46400142 atttgcttacctattaaccaaaccgatccgaaccaaaacaaatattt 46400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 45920187 - 45920064
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||||||||||||||||||||| |||  |||| |||||| || |||||||||||||| ||||||||| |||||||| |||||||| |||     
T  45920187 cgaaccgaaattttgaaatggttcgggaaaactgaatcgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttaggttaaccgtttt 45920088  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
    ||||||||| ||||| ||||||||    
T  45920087 cttacctatgaaccgaaccgaacc 45920064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 45067664 - 45067543
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||| || || ||||||||||| ||||||||| |||||||| |||||||| |||     
T  45067664 cgaaccgaaattttgaaatggttcgggaaaactgaaccgaaccgtttcaggtatgcagctaaccgaactgaaccaaagttatggttcggttaaccgtttt 45067565  T
Q  295 cttacctattaaccgtaccgaa 316  Q
    ||||| ||| ||||| ||||||    
T  45067564 cttacatatgaaccgaaccgaa 45067543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 31845141 - 31845267
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||| ||||| | || ||||| |||| |||| |||||||||  ||||| || ||||||||| |||||||| |||||||||||||||||||||||||||     
T  31845141 aaatgtttcggaataatcgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacctattaacca 31845240  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     || |||||||| ||||||||||||||    
T  31845241 aactgaaccgaagcaaaacaaatattt 31845267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 35086400 - 35086517
Alignment:
Q  201 gaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacc 300  Q
    |||||||||||||||||||||||||| |||| ||||  ||||| || ||||| |||||||| ||||||||| |||||||| |||||||| ||| ||||||    
T  35086400 gaaattttgaaatggttcgggaaaactgaaccgaaccatttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacc 35086499  T
Q  301 tattaaccgtaccgaacc 318  Q
    ||| ||||| || |||||    
T  35086500 tatgaaccgaactgaacc 35086517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 11353728 - 11353810
Alignment:
Q  245 gtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaac 328  Q
    ||||||| ||||||||| ||||||||| |||||||| |||||||| ||||||| ||||||||||| ||| ||||||||||||||    
T  11353728 gtttggaactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcctattaaccgaacc-aaccgaaccaaaac 11353810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 8550734 - 8550611
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| | ||||||||||| |  | |||||||| |||| |||| | ||||| | ||||||||| ||||||||| |||||||| |||||||| ||||    
T  8550734 cgaaccgaagtgttgaaatggtttgaaataaccgaaccgaaccgtttaaggtttgaaactaaccgaactgaaccaaagttatggttcggttaaccgtttg 8550635  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
     || |||||| |||  ||||||||    
T  8550634 tttgcctatttaccaaaccgaacc 8550611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 32030388 - 32030317
Alignment:
Q  257 ccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaac 328  Q
    ||||| ||||||||| |||||||| | |||||| ||||||||||||||| ||  ||||||||||||||||||    
T  32030388 ccgaactgaaccaaagttatggttcgattaaccgtttgcttacctattagccaaaccgaaccgaaccaaaac 32030317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 32747101 - 32747060
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccgaa 203  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  32747101 aaaataaccgaaccattataatggttcacgaaccgaaccgaa 32747060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 15649241 - 15649100
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||||||||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  15649241 cgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagtttggagctaaccgagctgaaccaaagttatggtttggttaaccatttg 15649142  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  15649141 cttacctattaaccataccgaaccgaaccaaaacaaatattt 15649100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 32132145 - 32132013
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||| |||||||||| ||||||||||||| ||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  32132145 cgaaccgaaccaaaattttgaagtggttcgggaaaatcgaaccgaaccgtttcaagtttggaactaaccgaattgagccaaagttatggtttggttaacc 32132046  T
Q  290 atttgcttacctattaaccgtaccgaaccgaac 322  Q
    ||||||||||||||||||| ||||||| |||||    
T  32132045 atttgcttacctattaaccataccgaatcgaac 32132013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 790094 - 790235
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |||||| || ||||| |||||||| ||||||||| |||||||| |||||||| |||     
T  790094 cgaaccgaaattttgaaatggttcgagaaaatcgaaccgaaccgtttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgtttt 790193  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||||| ||||| |||||||||||||||||| |||||||    
T  790194 cttacctatgaaccgaaccgaaccgaaccaaaaccaatattt 790235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 24186652 - 24186780
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  24186652 cgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 24186751  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||| | ||||||||    
T  24186752 gttttcttacctatgaactgaaccgaacc 24186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 34387681 - 34387555
Alignment:
Q  192 aatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccat 291  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| |||||||| |    
T  34387681 aatcgaaccgaaattttgaaatggtttgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgt 34387582  T
Q  292 ttgcttacctattaaccgtaccgaacc 318  Q
    || ||||||||| ||| | ||||||||    
T  34387581 tttcttacctatgaactgaaccgaacc 34387555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 27842686 - 27842558
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  27842686 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 27842587  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||| ||| ||| | ||||||||    
T  27842586 gttttcttacgtatgaactgaaccgaacc 27842558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 34393625 - 34393753
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  34393625 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 34393724  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||| ||| ||| | ||||||||    
T  34393725 gttttcttacgtatgaactgaaccgaacc 34393753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 17305189 - 17305044
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||| ||||||||||| |||||||||| |||| |||||| || || | |||||||||  |||||||| |||||||| ||||||||    
T  17305189 cgaaccgaaccgaaattttaaaatggttcgg-aaaaccgaaccgaaccgtttcatgtatgcaactaaccgaaccgaaccaaagttatggttcggttaacc 17305091  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||| ||||| || ||||||||||||||| |||||||    
T  17305090 gttttcttacctatgaaccgaactgaaccgaaccaaaaccaatattt 17305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 51236432 - 51236294
Alignment:
Q  197 aaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgct 296  Q
    |||| ||||||||||||||||| | |||||||||| |||| |||||| || |||| |||||| || ||||||||| |||||||| |||||||  ||| ||    
T  51236432 aaccaaaattttgaaatggttcag-aaaaccgaaccgaaccgtttcaggtatggacctaaccaaactgaaccaaagttatggttcggttaactgttttct 51236334  T
Q  297 tacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||| ||||| |||||||||||||||||  |||||||    
T  51236333 tacctatgaaccgaaccgaaccgaaccaaaatcaatattt 51236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 24918972 - 24918874
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaacc 308  Q
    ||||||||||| ||||  ||||||||| |||| |||||||||  ||||| || |||| |||| ||||||||||||||||||||||||||||||||||||    
T  24918972 aaatggttcggaaaaattgaactgaaccgtttaaagtttggaattaaccaaactgaatcaaagttatggtttggttaaccatttgcttacctattaacc 24918874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 33376538 - 33376654
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    |||||||||||| | | ||||||| |||||||||| |  |||||| ||||  ||||||||||||     ||||| |||||| ||||||||| ||||||||    
T  33376538 ttgaaatggttcagaataaccgaattgaactgtttaagttttggaactaattgaattgaaccaa-----tggttcggttaatcatttgcttgcctattaa 33376632  T
Q  307 ccgtaccgaaccgaaccaaaac 328  Q
    ||| ||||||||||||||||||    
T  33376633 ccgaaccgaaccgaaccaaaac 33376654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 22871241 - 22871354
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    ||||| ||||||||||||||| |||||| ||||||||||||  |||| |||| | || | ||| ||||  || ||||||||| |||||||| ||||||||    
T  22871241 cgaattgaaccgaaattttgatatggtttgggaaaaccgaatcgaaccgttttaggtatagagttaactaaactgaaccaaagttatggttcggttaacc 22871340  T
Q  290 atttgcttacctat 303  Q
     ||| |||||||||    
T  22871341 gttttcttacctat 22871354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 32000583 - 32000723
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    |||||||| | |||||||||||  | ||||| |||| |||| |||| |  |||||| ||| | ||| |||| |||| |||||||| | |||| ||||||     
T  32000583 gaaccgaattgttgaaatggtttagaaaaactgaaccgaaccgtttaagatttggaactatctgaactgaatcaaagttatggttcgattaatcatttgt 32000682  T
Q  296 ttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||||| ||| |||||||||||||  |||||||    
T  32000683 ttacctattaaccgaaccaaaccgaaccaaaatcaatattt 32000723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 8066756 - 8066717
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccg 201  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  8066756 aaaataaccgaaccattataatggttcacgaaccgaaccg 8066717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 9624050 - 9623917
Alignment:
Q  202 aaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacct 301  Q
    |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  9624050 aaattttgaaatggttcgggaaaaccaaactgaaccgttttaagtttggagctaaccga-ttgaaccaaagttatggtttggttaaccatttgcttacct 9623952  T
Q  302 attaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||| || ||||||||||||||||||||||||    
T  9623951 attaaccatatcgaaccgaaccaaaacaaatattt 9623917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 31365492 - 31365620
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| |||||||||||||| ||||||||| |||||||| ||||||||    
T  31365492 cgaaccgaaccgaaattttgaaatggtttgggaaaatcgaaccgaaccgtttcaagtatggagctaaccgaactgaaccaaagttatggttcggttaacc 31365591  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||| | ||||||||    
T  31365592 gttttcttacctatgaactgaaccgaacc 31365620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 43177118 - 43177244
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||||||||| |||| |||| |||| |||||||||  ||| | || |||||| || |||||||| ||||||||||||||||||||||||||||    
T  43177118 aaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaatcaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccg 43177217  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||||||| ||||||||    
T  43177218 aaccaaaccgaaccaaaataaatattt 43177244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 2154118 - 2153988
Alignment:
Q  201 gaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacc 300  Q
    ||||||||||||  ||| ||||||||||||| |||| || | | || |||||||||||||| ||||||||| |||||||| |||||||| ||| ||||||    
T  2154118 gaaattttgaaaaagtttgggaaaaccgaaccgaaccgtgttaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacc 2154019  T
Q  301 tattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||     | | ||||||||||||||||||||||||    
T  2154018 tat-----gaatcgaaccgaaccaaaacaaatattt 2153988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 2152963 - 2153002
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccg 201  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  2152963 aaaataaccgaaccattataatggttcacgaaccgaaccg 2153002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 5270553 - 5270442
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    |||||||||||||| | ||| |||| ||||||||| | || |||| ||||| ||| | ||||||| ||||||||   |||||| |||||||  |||||||    
T  5270553 ttgaaatggttcggaataactgaaccgaactgtttaaggtatggaactaactgaactaaaccaaagttatggttcaattaaccgtttgcttgtctattaa 5270454  T
Q  307 ccgtaccgaacc 318  Q
    ||  ||||||||    
T  5270453 ccaaaccgaacc 5270442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 41193372 - 41193411
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccg 201  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  41193372 aaaataaccgaaccattataatggttcacgaaccgaaccg 41193411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 23516104 - 23516250
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||||| ||||||||| ||||||||||||||| |    
T  23516104 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagtttggagctaaccgaactgaaccaaagttatggtttggttaatc 23516203  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||    
T  23516204 attttcttacctattaaccataccgaatcgaaccaaaacaaatattt 23516250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 35653430 - 35653290
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||| |||||||| || |||||||||  |||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  35653430 cgaaccgaaattttaaaatggtttgg-aaaaccgaatcgaaccgtttcaagtttggagctatccgaactgaaccaaagttatggtttggttaaccatttg 35653332  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  35653331 cttacctattaaccataccgaaccaaaccaaaacaaatattt 35653290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 38935775 - 38935910
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    ||||||||||||||||||||||||| |||||     ||||| |||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||    
T  38935775 gaaccgaaattttgaaatggttcggaaaaac-----tgaaccgtttcaagtttggagctaactgaactaaaccaaagttatggtttggttaaccatttgc 38935869  T
Q  296 ttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  38935870 ttacctattaaccataccgaaccaaaccaaaacaaatattt 38935910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 46171634 - 46171780
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||| |||| | || |||||||||||||| ||||||||| ||||| || ||||||||    
T  46171634 cgaaccgaaccgaaattttgaaatggtttgggaaaaccgaaccgaaccgttttaggtatggagctaaccgaactgaaccaaagttatgtttcggttaacc 46171733  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||| | || || |||||||||||||||||| |||||||    
T  46171734 gttttcttacctgtgaatcgaaccgaaccgaaccaaaaccaatattt 46171780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 26463914 - 26464011
Alignment:
Q  239 tttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26463914 tttcatgtttggagctaaccaaactgaaccaaagttatggtttggttaaccatttgcttacctattaatcataccgaaccgaaccaaaacaaatattt 26464011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 23393270 - 23393144
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||||||||| |||| |||| |||| |||||| ||  ||||| || |||||| || |||||||| ||||||||||||||||||||||||||||    
T  23393270 aaatggttcgggaaaactgaaccgaaccgtttaaagtttagaagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccg 23393171  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||||||| ||||||||    
T  23393170 aaccaaaccgaaccaaaataaatattt 23393144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 49706510 - 49706384
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||||||||| |||| |||| |||| |||||||||  ||||| || | |||| || |||||||| ||||||||||||||||||||||||||||    
T  49706510 aaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactaaacctaagttatggttcggttaaccatttgcttacctattaaccg 49706411  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||||||| ||||||||    
T  49706410 aaccaaaccgaaccaaaataaatattt 49706384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 12389167 - 12389295
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||||||||  ||||||||||||| |||| |||||||||||| ||||||||| | |  |||||||||||||| ||||||||| |||||||| |||||||     
T  12389167 cgaatcgaattgaaattttgaaatagttcaggaaaaccgaaccgaactgtttaaggcatggagctaaccgaactgaaccaaagttatggttcggttaact 12389266  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||||| ||||||||    
T  12389267 gttttcttacctatgaaccgaaccgaacc 12389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 31879656 - 31879528
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||| ||||||||||||||||| ||||||| | ||| |||| ||||||||| | |||||||||||| ||||||||| |||||||| | ||||||    
T  31879656 cgaaccgaactgaaattttgaaatggtttgggaaaatcaaaccgaaccgtttcaagtatagagctaaccgaactgaaccaaagttatggttcgattaacc 31879557  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||||| ||||||||    
T  31879556 gttttcttacctatgaaccgaaccgaacc 31879528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 336
Target Start/End: Complemental strand, 9117436 - 9117307
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    ||||||| |||||| ||||| |||| |||| |||| |||||||||  ||||| || ||||| |||||||||||| ||||||||||||| |||| || |||    
T  9117436 ttgaaatagttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaactaaaattatggttcggttaaccatttgtttacttagtaa 9117337  T
Q  307 ccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||  ||||| ||||||||||||||||||||    
T  9117336 ccaaaccgatccgaaccaaaacaaatattt 9117307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 318
Target Start/End: Original strand, 27510778 - 27510900
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    |||||||| | |||||||||||||| | |||||||| ||||  ||| | ||||| | ||||||||| ||||||||| |||||||| |||||||| |||||    
T  27510778 gaaccgaagtgttgaaatggttcggaataaccgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggttaaccgtttgc 27510877  T
Q  296 ttacctattaaccgtaccgaacc 318  Q
    || ||||||||||| ||||||||    
T  27510878 ttgcctattaaccgaaccgaacc 27510900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 6582333 - 6582461
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||| ||||||||||||| |||||||||||||||| | || |||| | || | |||||||||||| ||||||||| |||| ||| ||||||||    
T  6582333 cgaaccgaaccaaaattttgaaatgattcgggaaaaccgaaccgcaccgtttaaggtatagagctaaccgaactgaaccaaagttatagttcggttaacc 6582432  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| | ||||||| ||||| ||||||||    
T  6582433 gttttcctacctatgaaccgaaccgaacc 6582461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 318
Target Start/End: Complemental strand, 16048193 - 16048074
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagc--taaccgaattgaaccaaaattatggtttggttaaccattt 293  Q
    ||||||||||||||||||||||||||||||||     |||| ||||||  | ||||||  |||||||||||||||||| |||||||||||||| || |||    
T  16048193 gaaccgaaattttgaaatggttcgggaaaacc-----gaaccgtttcagttatggagctataaccgaattgaaccaaagttatggtttggttatccgttt 16048099  T
Q  294 gcttacctattaaccgtaccgaacc 318  Q
     ||| ||||| ||||| ||| ||||    
T  16048098 ccttgcctatgaaccgaaccaaacc 16048074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 48995737 - 48995828
Alignment:
Q  227 cgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaacc 318  Q
    ||||| |||| |||| | |||||||  ||||| || |||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||||    
T  48995737 cgaaccgaaccgtttaaggtttggaattaaccaaactgaaccaaaattatggttcggttaaccattttcttgcctattaaccgaaccaaacc 48995828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 2736707 - 2736792
Alignment:
Q  224 aaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    |||||||| |||| |||| |  |||||| ||||||||| ||||||||| |||||||| |||||||  |||| || |||||||||||    
T  2736707 aaccgaaccgaaccgtttaagatttggaactaaccgaactgaaccaaagttatggttcggttaactgtttgtttgcctattaaccg 2736792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 47996589 - 47996680
Alignment:
Q  229 aactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaa 321  Q
    |||||||| ||| || |||||||  |||| ||| ||||||||| || ||||| ||||||| |||| ||||||||| ||||| |||||||||||    
T  47996589 aactgaacagttacaggtttggaattaactgaactgaaccaaagtt-tggttcggttaacaattttcttacctatgaaccgaaccgaaccgaa 47996680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 6583978 - 6583940
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaacc 200  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  6583978 aaaataaccgaaccattataatggttcacgaaccgaacc 6583940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 26460712 - 26460757
Alignment:
Q  191 gaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaac 236  Q
    |||||||| |||||||||||||||||| |||||||| |||| ||||    
T  26460712 gaatcgaatcgaaattttgaaatggtttgggaaaactgaaccgaac 26460757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 32955809 - 32955948
Alignment:
Q  197 aaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgct 296  Q
    |||| ||||||||||||||||||| |||||||||| |||| |||||| ||| ||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  32955809 aaccaaaattttgaaatggttcggaaaaaccgaaccgaaccgtttcaggttgggagctaaccgaactgaatcaaagttatggtttggttaatcatttgct 32955908  T
Q  297 tacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32955909 tacctattaaccataccgaaccgaaccaaaacaaatattt 32955948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 28747551 - 28747689
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    ||||||||||||||||||||||||||||| ||||| | |||  |||||||||       ||||||||||||| ||||| ||| |||||||||||||||||    
T  28747551 cgaatcgaaccgaaattttgaaatggttcaggaaatc-gaatcgaactgttt-------ggagctaaccgaactgaactaaagttatggtttggttaacc 28747642  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  28747643 atttgcttacctattaaccataccgaaccgaaccaaaacaaatattt 28747689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 3523155 - 3523283
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  3523155 cgaatcgaaccgaaattttgaaatggttcgggaaaatcgaaccaaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 3523254  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||| | ||||||||    
T  3523255 gttttcttacctatgaactgaaccgaacc 3523283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 31069140 - 31069254
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||||||||||||||| |||| ||||||||||  ||||| || |||||||||||||| ||||||||| |||||||| |||||||| |||     
T  31069140 cgaaccgaaattttgaaatggttcggaaaaatcgaactgaaccatttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgtttt 31069239  T
Q  295 cttacctattaaccg 309  Q
    ||||||||| |||||    
T  31069240 cttacctatgaaccg 31069254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 31508561 - 31508461
Alignment:
Q  208 tgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaac 307  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||  ||||| || ||||||||| ||||||||  |||||||||||||||||||||||||    
T  31508561 tgaaatggttcggaaaaactgaactgaactgtttaaagtttggaagtaaccaaactgaaccaaagttatggttctgttaaccatttgcttacctattaac 31508462  T
Q  308 c 308  Q
    |    
T  31508461 c 31508461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 26818497 - 26818356
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||| |||||||||||||||||||||||| ||||| |     ||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  26818497 cgaaccgaaccaaaattttgaaatggttcgggaaaatcgaaccg-----tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 26818403  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| |||| |||  ||||  | |||||||||||||||| |||||||    
T  26818402 gttttcttatctaagaaccaaatcgaaccgaaccaaaaccaatattt 26818356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 33062142 - 33062040
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    |||||||| ||||| | ||||||||||||| |||| |  |||| | ||||||||| |||||||||||||||||| |||||||  ||||||| ||||||||    
T  33062142 ttgaaatgtttcggaataaccgaactgaaccgtttaagatttgaaactaaccgaactgaaccaaaattatggttcggttaactgtttgcttgcctattaa 33062043  T
Q  307 ccg 309  Q
    |||    
T  33062042 ccg 33062040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 8465186 - 8465256
Alignment:
Q  266 accaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||| ||||| || |||||||| |||||||||||||||| |  |||||||||||| |||| ||||||||    
T  8465186 accaaagttatgattcggttaaccgtttgcttacctattaatcaaaccgaaccgaactaaaataaatattt 8465256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 42545778 - 42545710
Alignment:
Q  255 aaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaac 328  Q
    ||||||| ||||||||| |||||||| |||||||| ||||||| | |||||||||     ||||||||||||||    
T  42545778 aaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcatattaaccg-----aaccgaaccaaaac 42545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 44774078 - 44773937
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||||||||||||||  |||||||||| ||||  ||| |||||||||| |||||||| ||||||||| ||||||||| ||||||||||||    
T  44774078 cgaaccgaaattttgaaatggttcgcaaaaaccgaaccgaacaattttaagtttggagttaaccgaactgaaccaaagttatggtttagttaaccatttg 44773979  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||| ||||||||| |||||||||||||||||| ||||||||    
T  44773978 cttaactattaaccataccgaaccgaaccaaaataaatattt 44773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 18021856 - 18021744
Alignment:
Q  224 aaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaacc 323  Q
    |||||||| |||| |||| ||| ||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  18021856 aaccgaaccgaaccgttttaaggttggagctaaccgaactcaaccaaagttatggtttggttaaccatttgtttacctattaaccataccgaaccgaacc 18021757  T
Q  324 aaaacaaatattt 336  Q
    |||||||||||||    
T  18021756 aaaacaaatattt 18021744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 338
Target Start/End: Complemental strand, 40293019 - 40292891
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||||||||| |||| |||| |||| |||||||||  ||||| || |||||| || |||||||| ||||||||||||||||||||||||||||    
T  40293019 aaatggttcgggaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccg 40292920  T
Q  310 taccgaaccgaaccaaaacaaatatttat 338  Q
     ||| ||||||||||||| ||||||||||    
T  40292919 aaccaaaccgaaccaaaataaatatttat 40292891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 50309003 - 50309148
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||||||||||||||  |||||||||| |||| |||| | || ||||||||| |||| ||||||||| ||||| || ||||||||    
T  50309003 cgaaccgaaccgaaattttgaaatggttcga-aaaaccgaaccgaaccgttttaggtatggagctaatcgaactgaaccaaagttatgtttcggttaacc 50309101  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||| ||| ||||| ||||||||||| |||| | |||||||    
T  50309102 gttttcttacttatgaaccgaaccgaaccgaatcaaacccaatattt 50309148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 13857073 - 13857195
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    |||||||||||||| ||||||||||| |||||||||| |||| |||||| || || | ||||||||| ||||||||| |||||||| |||||||| |||     
T  13857073 cgaaccgaaattttaaaatggttcgg-aaaaccgaaccgaaccgtttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgtttt 13857171  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
    ||||||||| ||||| ||| ||||    
T  13857172 cttacctatgaaccgaaccaaacc 13857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 10223139 - 10222998
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||| |||||||||||||||||||||||| ||||| |     ||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  10223139 cgaaccgaaccaaaattttgaaatggttcgggaaaatcgaaccg-----tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 10223045  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| |||| |||  ||||  | |||||||||||||||| |||||||    
T  10223044 gttttcttatctaagaaccaaatcgaaccgaaccaaaaccaatattt 10222998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 32863685 - 32863566
Alignment:
Q  197 aaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgct 296  Q
    ||||||| | |||||||||||||| | |||| ||| |||| |||  | ||||||| ||||||||| ||||||||| |||||||| ||||||||||||||     
T  32863685 aaccgaagtgttgaaatggttcggaataaccaaaccgaaccgttcaaggtttggaactaaccgaactgaaccaaagttatggttcggttaaccatttgca 32863586  T
Q  297 tacctattaaccgtaccgaa 316  Q
    || |||||||||| ||||||    
T  32863585 tatctattaaccgaaccgaa 32863566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 44416515 - 44416396
Alignment:
Q  208 tgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaac 307  Q
    ||||||||||||| ||||| |||| ||||  ||| |||| ||||  ||| | || |||||||||  |||||||||||||||||||| |||||||||||||    
T  44416515 tgaaatggttcggaaaaactgaaccgaaccatttaaagtctggaagtaatcaaactgaaccaaagctatggtttggttaaccatttacttacctattaac 44416416  T
Q  308 cgtaccgaaccgaaccaaaa 327  Q
    |  |||||||||||||||||    
T  44416415 caaaccgaaccgaaccaaaa 44416396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 13840785 - 13840878
Alignment:
Q  243 aagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||||||||  ||||| || ||||||||| |||||||| ||||||||||||| |||||||||||||  | ||| ||||||||||||||||||||    
T  13840785 aagtttggaaataaccaaactgaaccaaagttatggttcggttaaccatttgtttacctattaaccaaatcgatccgaaccaaaacaaatattt 13840878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 5938198 - 5938085
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||||||||||||||| ||||| |||| |||| |||||| || ||  | ||  |||| ||||||||| |||||||| ||||||||    
T  5938198 cgaaccgaaccgaaattttgaaatggttcggaaaaactgaaccgaaccgtttcaggtatgctggtatacgaactgaaccaaagttatggttcggttaacc 5938099  T
Q  290 atttgcttacctat 303  Q
     ||| |||||||||    
T  5938098 gttttcttacctat 5938085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 327
Target Start/End: Complemental strand, 33639523 - 33639403
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    |||||||||||||| | || ||| | |||| |||| | |||| ||  |||||||| ||||||||| |||||||| | |||||| ||||||| ||||||||    
T  33639523 ttgaaatggttcggaataatcgagccgaaccgtttaaggttttgaattaaccgaaatgaaccaaagttatggttcgattaaccgtttgcttccctattaa 33639424  T
Q  307 ccgtaccgaaccgaaccaaaa 327  Q
    ||| | |||||||||||||||    
T  33639423 ccgaatcgaaccgaaccaaaa 33639403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 315
Target Start/End: Complemental strand, 50303326 - 50303218
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    ||||||||||| || | |||||||| |||| |||| | ||||| ||||| ||||| ||||||||| ||||| || |||||||| ||||||| ||||||||    
T  50303326 ttgaaatggtttggaataaccgaaccgaaccgtttaaggtttgaagctatccgaactgaaccaaagttatgtttcggttaaccgtttgcttgcctattaa 50303227  T
Q  307 ccgtaccga 315  Q
    ||| |||||    
T  50303226 ccgaaccga 50303218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 55325189 - 55325311
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| | |||||||||||||| | ||||||||||||| |||| | ||||| | |||||| || ||||||||| |||||||| |  ||||| ||||    
T  55325189 cgaaccgaagtgttgaaatggttcggaataaccgaactgaaccgtttaaggtttgaaactaacctaactgaaccaaagttatggttcgtctaaccgtttg 55325288  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
    ||| ||| ||||||| ||||||||    
T  55325289 cttgcct-ttaaccgaaccgaacc 55325311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 34122479 - 34122365
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| | |||||||||||  | ||||| ||||  ||| |||| |  |||||| ||| ||||| | ||||||| ||||||||||||||||||| ||    
T  34122479 cgaaccgaattgttgaaatggtttagaaaaactgaaccaaaccgtttaagatttggaactatccgaactcaaccaaagttatggtttggttaaccatctg 34122380  T
Q  295 cttacctattaaccg 309  Q
    |||||||||||||||    
T  34122379 cttacctattaaccg 34122365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 40929327 - 40929465
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||| |||| | ||||||| ||| || | || |||||||||| |||| | ||||||| ||||||||| ||||||||| |||||||| |||||||     
T  40929327 cgaaccgaatcgaagtgttgaaatcgtttggaataatcgaactgaaccgtttaaggtttggaactaaccgaactgaaccaaagttatggttcggttaact 40929426  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaac 328  Q
     ||||| | ||| ||||| | |||||||||||| |||||    
T  40929427 gtttgcgtgcctgttaactgaaccgaaccgaactaaaac 40929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 50328467 - 50328335
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||||| |||||||||||||| | |||||||| |||| |||| |  ||| || | ||| ||| ||||||||| |||||||| |||||||| |||     
T  50328467 cgaaccgaaatgttgaaatggttcggaataaccgaaccgaaccgtttaagatttagaacgaactgaactgaaccaaagttatggttcggttaaccgtttc 50328368  T
Q  295 cttacctattaaccgtaccgaaccgaaccaaaa 327  Q
     | || |  |||||| |||||||||||||||||    
T  50328367 gtaacttgctaaccgaaccgaaccgaaccaaaa 50328335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 5293235 - 5293301
Alignment:
Q  264 gaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaa 330  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  5293235 gaaccaaagctatggttcggttaaccatttgcttacctattaaccaaaccaaaccgaatcaaaacaa 5293301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 8600202 - 8600276
Alignment:
Q  260 aattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaaatat 334  Q
    ||||||| |||| |||||||  |||||||||||| ||||||||| || |  || |||||||||||||||||||||    
T  8600202 aattgaatcaaagttatggtacggttaaccatttacttacctatgaatcaaactgaaccgaaccaaaacaaatat 8600276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 25639494 - 25639412
Alignment:
Q  224 aaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    ||||||||| ||| |||| | ||||| |  |||||||| ||||||||| |||||||| |||||||||||||||| | ||||||    
T  25639494 aaccgaactaaaccgtttaaggtttgaaattaaccgaactgaaccaaagttatggttcggttaaccatttgcttgcttattaa 25639412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 20254825 - 20254758
Alignment:
Q  265 aaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaacaaat 332  Q
    ||||||| ||||| || |||||||||||||| |||||||||| |  ||||| ||||| ||||||||||    
T  20254825 aaccaaagttatgtttcggttaaccatttgcatacctattaatcaaaccgatccgaatcaaaacaaat 20254758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 44772775 - 44772814
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccg 201  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  44772775 aaaataaccgaatcattataatagttcacgaaccgaaccg 44772814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 7510 - 7364
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||||||||||||||||||||| |||  |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  7510 cgaaccgaaccgaaattttgaaatggttcgggaaaactgaatcgaaccgtttcacgtatggagctaaccgaactgaaccaaagttatggttcggttaacc 7411  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||| ||||| |||||||||||||||||| |||||||    
T  7410 gttttcttacctatgaaccgaaccgaaccgaaccaaaaccaatattt 7364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 6093 - 6142
Alignment:
Q  153 aactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 201  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  6093 aactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 6142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 19147544 - 19147690
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||||||||| ||||||||||| |||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  19147544 cgaaccgaaccgaaattttgaaatgattcgggaaaactgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 19147643  T
Q  290 atttgcttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    |||| ||||||||| ||||  |||||||||||||||||| |||||||    
T  19147644 attttcttacctatgaaccaaaccgaaccgaaccaaaaccaatattt 19147690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 33691786 - 33691658
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  33691786 cgaaccgaatcgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 33691687  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||||| ||||||||    
T  33691686 gttttcttacctatgaaccgaaccgaacc 33691658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 10902988 - 10903116
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  10902988 cgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 10903087  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||| ||| ||||| | ||||||    
T  10903088 gttttcttacatatgaaccgaatcgaacc 10903116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33837416 - 33837501
Alignment:
Q  1 agttaaagaacaaattttttaatcaaatggctctagggtgacccacctttaaaagaacaaactaccaaaaaagtaagttcgtccttt 87  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33837416 agttaaagaacaaatttt-taatcaaatggctctagggtaacccacctttaaaagaacaaactaccaaaaaagcaagttcgtccttt 33837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 4885596 - 4885470
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||||||||  |||| |||| |||| |||||||||  ||||| || |||||| || |||||||| ||||||||||||||||||||||||||||    
T  4885596 aaatggttcgggaaaattgaaccgaaccgtttaaagtttggaagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctattaaccg 4885497  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||||||| ||||||||    
T  4885496 aaccaaaccgaaccaaaataaatattt 4885470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 26053728 - 26053596
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    |||||||| | |||||||||||||| | ||  |||| |||| |||| | ||||||| ||||||||||||||||||| |||||||| |||||||| |||||    
T  26053728 gaaccgaagtgttgaaatggttcggaataaatgaaccgaaccgtttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccgtttgc 26053629  T
Q  296 ttacctattaaccgtaccgaaccgaaccaaaac 328  Q
    || ||||||||||  ||||||||||||||||||    
T  26053628 ttgcctattaacctaaccgaaccgaaccaaaac 26053596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 21184194 - 21184068
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||| ||||| |||| |||| |||| |||||||||  ||||| || ||||||||| |||||||| |||||||||||||||||| |||  ||||    
T  21184194 aaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacttatataccg 21184095  T
Q  310 taccgaaccgaaccaaaacaaatattt 336  Q
     ||| ||||||||||||||||||||||    
T  21184094 aaccaaaccgaaccaaaacaaatattt 21184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 17564538 - 17564448
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtt 280  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||| |||||| || |||||||||||||| ||||||||| ||||||||    
T  17564538 cgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggtt 17564448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 42475672 - 42475789
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| |||||||||||||||| | |||||||| |     ||| | ||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  42475672 cgaaccgaagttttgaaatggttcggaataaccgaaccg-----tttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccatttg 42475766  T
Q  295 cttacctattaaccgtaccgaac 317  Q
    | ||||||||||||| |||||||    
T  42475767 catacctattaaccgaaccgaac 42475789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 19127329 - 19127425
Alignment:
Q  197 aaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccattt 293  Q
    |||||||||||||||||| |||||||||||||||| |||| |||| | || |||||||||||||| ||||||||| || | ||| ||||||||||||    
T  19127329 aaccgaaattttgaaatgattcgggaaaaccgaaccgaaccgttttaggtatggagctaaccgaactgaaccaaagttgttgttcggttaaccattt 19127425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 10226777 - 10226881
Alignment:
Q  224 aaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaacc-gaac 322  Q
    ||||||||  ||| |||| | ||||||| ||||||||| |||||||||||||||||| |||||||| ||| ||| ||||||||||| |||||||| ||||    
T  10226777 aaccgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaaattatggttcggttaaccgttttcttgcctattaaccgaaccgaaccagaac 10226876  T
Q  323 caaaa 327  Q
    |||||    
T  10226877 caaaa 10226881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 318
Target Start/End: Original strand, 40346963 - 40347074
Alignment:
Q  207 ttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaa 306  Q
    ||||||||||| |||||||||||||  ||| |||| | ||||| | ||||||||| ||||||| | ||||| |||| |||||| ||||||||||||| ||    
T  40346963 ttgaaatggttagggaaaaccgaaccaaaccgtttaaggtttgaaactaaccgaactgaaccagagttatgatttgattaaccgtttgcttacctatgaa 40347062  T
Q  307 ccgtaccgaacc 318  Q
    ||| ||||||||    
T  40347063 ccgaaccgaacc 40347074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 14333949 - 14334078
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    |||||||||||||||||||||||| |||||||     |||| |||||| || |||||||||| ||| ||||||||| |||||||| |||||  | ||| |    
T  14333949 gaaccgaaattttgaaatggttcgagaaaacc-----gaaccgtttcaggtatggagctaactgaactgaaccaaagttatggttcggttactcgttttc 14334043  T
Q  296 ttacctattaaccgtaccgaaccgaaccaaaacaaatattt 336  Q
    ||||||||       |||||||||||||||||| |||||||    
T  14334044 ttacctat------gaccgaaccgaaccaaaaccaatattt 14334078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 40614641 - 40614762
Alignment:
Q  212 atggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgta 311  Q
    ||||||||| ||||  |||| |||| |||| |||||||||  ||||| || ||||||||| |||||||| |||||||||||| |||| |||||||||  |    
T  40614641 atggttcggaaaaattgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttacttatctattaaccaaa 40614740  T
Q  312 ccgaaccgaaccaaaacaaata 333  Q
     ||||| ||| || ||||||||    
T  40614741 tcgaactgaatcacaacaaata 40614762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 27114944 - 27115008
Alignment:
Q  254 taaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaacc 318  Q
    |||||||| ||||||||| |||||||| |||||||||||| ||| ||||||||||| ||||||||    
T  27114944 taaccgaactgaaccaaagttatggttcggttaaccatttacttccctattaaccgaaccgaacc 27115008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 33238167 - 33238103
Alignment:
Q  263 tgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaa 327  Q
    ||||||||| ||||||||  ||||||| ||||||| | ||||||||| |||||||||||||||||    
T  33238167 tgaaccaaagttatggttcagttaaccgtttgcttgcatattaaccgaaccgaaccgaaccaaaa 33238103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 10904527 - 10904464
Alignment:
Q  139 aaccgtgcgaatcaaactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 201  Q
    ||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||| |||||||    
T  10904527 aaccgcgcgaaccaaaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 10904464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 28734043 - 28733984
Alignment:
Q  246 tttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctatta 305  Q
    |||||| ||||||||| | ||||||| ||||||||||||||||| ||||||| |||||||    
T  28734043 tttggaactaaccgaactaaaccaaagttatggtttggttaaccgtttgcttgcctatta 28733984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 13947149 - 13947194
Alignment:
Q  263 tgaaccaaaattatggtttggttaaccatttgcttacctattaacc 308  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||    
T  13947149 tgaaccaaagttatggttcggttaaccatttgcttacatattaacc 13947194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 15254947 - 15255070
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| | || ||||||||||| | ||| |||| ||||  ||| | ||||| | ||||||||| ||||||||| |||||||| ||| |||| ||||    
T  15254947 cgaaccgaagtgttaaaatggttcggaataactgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggtcaaccgtttg 15255046  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
    |||    |||||||| ||||||||    
T  15255047 cttggtcattaaccgaaccgaacc 15255070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 33690399 - 33690438
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaaccg 201  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  33690399 aaaataaccgaaccattataatggttcacgaaccgaaccg 33690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 36369899 - 36369864
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcga 197  Q
    |||||||||||||||||||||||| |||||||||||    
T  36369899 aaaataaccgaaccattataatagatcacgaatcga 36369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 8259175 - 8259099
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaa 266  Q
    ||||||||||| ||  |||||||||||| | |||||||||||  ||| |||| | ||||||| ||||||||| ||||    
T  8259175 cgaatcgaaccaaatatttgaaatggtttgagaaaaccgaaccaaaccgtttaaggtttggaactaaccgaactgaa 8259099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 27596507 - 27596620
Alignment:
Q  223 aaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaac 322  Q
    ||||||||| |||| |||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27596507 aaaccgaaccgaaccgtttcatgttggcagctaaccgaactgaaccaaaattatggtttggttaaccatttgcttacctattaaccataccgaaccgaac 27596606  T
Q  323 caaaacaaatattt 336  Q
    ||||||||||||||    
T  27596607 caaaacaaatattt 27596620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 17154422 - 17154294
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| |||||||||||||||||||||||| ||||||||||||  ||| |||||| || ||||| |||||||| ||||||||| |||||||| ||||||||    
T  17154422 cgaaccgaaccgaaattttgaaatggttcaggaaaaccgaaccaaaccgtttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaacc 17154323  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||| ||||||||| ||||| ||||||||    
T  17154322 gttttcttacctatgaaccgaaccgaacc 17154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 33702565 - 33702688
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |     ||||| || |||||||||||||| ||||||||| |||||||| ||||||||    
T  33702565 cgaaccgaaccgaaattttgaaatggtttgggaaaaccgaaccg-----tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaacc 33702659  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
    |||| ||||||||  ||||| ||||||||    
T  33702660 attttcttacctaagaaccgaaccgaacc 33702688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 23111312 - 23111435
Alignment:
Q  195 cgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttg 294  Q
    ||||||||| | |||||||||||||| | |||||||| |||| |||| | ||||||| ||||||||| |||| |||| |||||||| |||||| ||||||    
T  23111312 cgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccgtttgatgtttggaactaaccgaactgaatcaaagttatggttcggttaatcatttg 23111411  T
Q  295 cttacctattaaccgtaccgaacc 318  Q
    |||  |||||||||| ||||||||    
T  23111412 cttgtctattaaccgaaccgaacc 23111435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 29092890 - 29092773
Alignment:
Q  201 gaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacc 300  Q
    ||||||||||||| ||||||||||| ||||| |||| |||||| || |||||||||||||| ||||||||| |||||||| || ||||| ||| |||| |    
T  29092890 gaaattttgaaatcgttcgggaaaatcgaaccgaaccgtttcaggtatggagctaaccgaactgaaccaaagttatggttcggataaccgttttcttatc 29092791  T
Q  301 tattaaccgtaccgaacc 318  Q
    ||| ||||  ||||||||    
T  29092790 tatgaaccaaaccgaacc 29092773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 12356471 - 12356342
Alignment:
Q  189 acgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaac 288  Q
    ||||| |||| |||| | ||||||||||||||   |||||||| |||| |||| | |||||||  |||||||||||||||||| ||||||||||||||||    
T  12356471 acgaaccgaatcgaagtgttgaaatggttcggagtaaccgaaccgaaccgtttaaggtttggaaataaccgaattgaaccaaagttatggtttggttaac 12356372  T
Q  289 catttgcttacctattaaccgtaccgaacc 318  Q
      |||||||  ||||| |||| ||||||||    
T  12356371 agtttgcttggctattgaccgaaccgaacc 12356342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 29398049 - 29397942
Alignment:
Q  210 aaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccg 309  Q
    ||||||||||| ||||  |||||||||||||| |||||||||  ||||| || ||||| | | |||||||| ||||||||||||| |||||||||||||     
T  29398049 aaatggttcggaaaaattgaactgaactgtttaaagtttggaagtaaccaaactgaacgaca-ttatggttcggttaaccatttgtttacctattaacca 29397951  T
Q  310 taccgaacc 318  Q
     ||||||||    
T  29397950 aaccgaacc 29397942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 8636226 - 8636143
Alignment:
Q  245 gtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgcttacctattaaccgtaccgaaccgaaccaaaac 328  Q
    ||||||| ||||||||  ||||||||| |||||| | |||||||| ||||||||||||||||||| || ||||| |||||||||    
T  8636226 gtttggaactaaccgagctgaaccaaagttatggctcggttaaccgtttgcttacctattaaccgaactgaaccaaaccaaaac 8636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 27597451 - 27597388
Alignment:
Q  139 aaccgtgcgaatcaaactgaaccaaaa-taaccgaaccattataatagttcacgaatcgaaccg 201  Q
    ||||| ||||| | ||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  27597451 aaccgcgcgaaccgaactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccg 27597388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 1801029 - 1800909
Alignment:
Q  196 gaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaaccatttgc 295  Q
    |||||||||| || ||||||||| | | || ||||  ||||||||| | ||||||| |||| |||| ||||||||| |||| |||  ||||||| |||      
T  1801029 gaaccgaaatgttaaaatggttcagaataatcgaatcgaactgtttaaggtttggaactaatcgaactgaaccaaagttatcgttcagttaaccgtttat 1800930  T
Q  296 ttacctattaaccgtaccgaa 316  Q
    || ||||||||||| ||||||    
T  1800929 ttgcctattaaccgaaccgaa 1800909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 33703868 - 33703832
Alignment:
Q  162 aaaataaccgaaccattataatagttcacgaatcgaa 198  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  33703868 aaaataaccgaaccattataatggttcacgaaccgaa 33703832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 54197 - 54069
Alignment:
Q  190 cgaatcgaaccgaaattttgaaatggttcgggaaaaccgaactgaactgtttcaagtttggagctaaccgaattgaaccaaaattatggtttggttaacc 289  Q
    ||||| |||| ||| | |||||||||||| | | |||| ||| |||| || | | ||||||| ||||||||| ||||||||| |||||||| ||||||||    
T  54197 cgaattgaactgaagtattgaaatggttcagaataaccaaaccgaaccgtctaaggtttggaactaaccgaactgaaccaaagttatggttcggttaacc 54098  T
Q  290 atttgcttacctattaaccgtaccgaacc 318  Q
     ||||||||||||||||||| ||||||||    
T  54097 gtttgcttacctattaaccgaaccgaacc 54069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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