View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21070_low_12 (Length: 365)
Name: NF21070_low_12
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 11103450 - 11103774
Alignment:
| Q |
28 |
aggtgaaacgatcctcatgtacacttttccagtcttgttaattgctactttgggatgtgtctatctccacatagccaaaaaatcatcaaatgagagcaac |
127 |
Q |
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| T |
11103450 |
aggtgaaacgatcctcatgtacacttttccagtcttgttaattgctactttgggatgtgtctatctccacatagccaaaaaatcatcaaatgagagcaac |
11103549 |
T |
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| Q |
128 |
atagaaatgtaatattttgttacgtaccttaatctagttatcctatttgtgctattgtatgattttaatatatacttaatttgcatctaattaatatatg |
227 |
Q |
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| T |
11103550 |
atagaaatgtaatatttttttta--accttaatctagttatcctatttgtgctattgtatgattttaatatatacttaatttccatctaattaatatatg |
11103647 |
T |
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| Q |
228 |
taannnnnnngtacaatcagtggcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttctatca |
327 |
Q |
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| T |
11103648 |
t-atttttttgcacaatcagtcgcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttctatca |
11103746 |
T |
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| Q |
328 |
cagaaatagcattcttgctcatgttcat |
355 |
Q |
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| T |
11103747 |
cagaaatagcattcttgctcatgttcat |
11103774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 355
Target Start/End: Original strand, 11589893 - 11590212
Alignment:
| Q |
25 |
ttcaggtgaaacgatcctcatgtacacttttccagtcttgttaattgctactttgggatgtgtctatctccacatagccaaaaaatcatcaaatgagagc |
124 |
Q |
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| T |
11589893 |
ttcaggtgaaacgatcctcatgtacacttttccagtcttgttaattgctactttgggatgtgtctatctccacatagccaaaaaatcatcaaatgagagc |
11589992 |
T |
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| Q |
125 |
aacatagaaatgtaatattttgttacgtaccttaatctagttat-cctatttgtgctattgtatgattttaatatatacttaatttgcatctaattaata |
223 |
Q |
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| T |
11589993 |
aacatagaaatgtaatattttttta---accttaatctagttatccctatttgtgctattgtatgattttaatata---------tgaatctaattaata |
11590080 |
T |
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| Q |
224 |
tatgtaannnnnnngtacaatcagtggcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttct |
323 |
Q |
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| T |
11590081 |
tatgtaatttttttgtacaatcagtcgcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttct |
11590180 |
T |
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| Q |
324 |
atcacagaaatagcattcttgctcatgttcat |
355 |
Q |
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| T |
11590181 |
atcacagagatagcatttttgctcatgttcat |
11590212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 11115513 - 11115628
Alignment:
| Q |
240 |
acaatcagtggcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttctatcacagaaatagcat |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
11115513 |
acaatcagtggcaatgggaagaaacatgggacaaccatatggaatcgtccaatgcttgtgaaaggacctcttggaattgtttctattacagaaatagcat |
11115612 |
T |
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| Q |
340 |
tcttgctcatgttcat |
355 |
Q |
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| T |
11115613 |
tcttgcttatgttcat |
11115628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 11115341 - 11115436
Alignment:
| Q |
47 |
tacacttttccagtcttgttaattgctactttgggatgtgtctatctccacatagccaaaaaatcatcaaatgagagcaacatagaaatgtaatatttt |
145 |
Q |
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|||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |
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| T |
11115341 |
tacacttttccagtgttgttaatagccactttgggatgtgtctttctccacatagccaaaaa---atcaaatgagagcaacatggaaatgtaacatttt |
11115436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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