View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_low_14 (Length: 346)

Name: NF21070_low_14
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_low_14
NF21070_low_14
[»] chr8 (5 HSPs)
chr8 (1-327)||(12123116-12123442)
chr8 (68-122)||(13438313-13438367)
chr8 (68-122)||(13438648-13438702)
chr8 (68-122)||(13445047-13445101)
chr8 (80-141)||(14692591-14692651)
[»] chr7 (2 HSPs)
chr7 (128-167)||(47819405-47819444)
chr7 (60-121)||(22559524-22559585)
[»] chr4 (1 HSPs)
chr4 (9-62)||(36467319-36467372)
[»] chr2 (1 HSPs)
chr2 (45-110)||(36031058-36031123)
[»] chr3 (2 HSPs)
chr3 (123-163)||(26634596-26634636)
chr3 (68-116)||(54254014-54254062)
[»] chr1 (1 HSPs)
chr1 (70-122)||(28306808-28306860)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 12123116 - 12123442
Alignment:
Q  1 ctcccttcaatttagtacctaaactgtataaatacaataaatattccctaaagtatataaaaaattgtcaattttgtccctaacatcttaataaaagcga 100  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12123116 ctcccttcaatttagtacctaaactgtataaatacaaaaagtattccctaaagtatataaaaaattgtcaattttgtccctaacatcttaataaaagcga 12123215  T
Q  101 ctaaattgacagattttatataggacaacttatcatatttacatagtttagggactaaattgaagaatgggtgatag-nnnnnnnnnnnnnngaatcgga 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||     
T  12123216 ctaaattgacagattttatataggactacttatcatatttacatagtttagggactaaattgaagaatgggtgatagtttttttttttgtttgaatcggc 12123315  T
Q  200 aaaatattattcatgtcgagttgtgtaagacacaaaaactcgcagacaaaacgggcatagaaaaatacaaagggacagtatatacgcggttcaccttccc 299  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12123316 aaaatattattcatgtcgagttgtgtaagacac-aaaactcgcagacaaaacgggcatagaaaaatacaaagggacggtatatatgcggttcaccttccc 12123414  T
Q  300 aaaccaccctaaccccaaaatgcagcac 327  Q
    ||||||||||||||||||||||||||||    
T  12123415 aaaccaccctaaccccaaaatgcagcac 12123442  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 13438313 - 13438367
Alignment:
Q  68 tcaattttgtccctaacatcttaataaaagcgactaaattgacagattttatata 122  Q
    ||||||| |||||| |||||||||||| || |||||| || ||||||||||||||    
T  13438313 tcaatttagtccctgacatcttaataacagggactaagttaacagattttatata 13438367  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 13438648 - 13438702
Alignment:
Q  68 tcaattttgtccctaacatcttaataaaagcgactaaattgacagattttatata 122  Q
    ||||||| |||||| |||||||||||| || |||||| || ||||||||||||||    
T  13438648 tcaatttagtccctgacatcttaataacagggactaagttaacagattttatata 13438702  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 13445047 - 13445101
Alignment:
Q  68 tcaattttgtccctaacatcttaataaaagcgactaaattgacagattttatata 122  Q
    ||||||| |||||| |||||||||||| || |||||| || ||||||||||||||    
T  13445047 tcaatttagtccctgacatcttaataacagggactaagttaacagattttatata 13445101  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 14692591 - 14692651
Alignment:
Q  80 ctaacatcttaataaaagcgactaaattgacagattttatataggacaacttatcatattta 141  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||| |  || |||||||||||    
T  14692591 ctaacaacttaa-aaaagagactaaattgacagattttatatagcattacctatcatattta 14692651  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 47819405 - 47819444
Alignment:
Q  128 acttatcatatttacatagtttagggactaaattgaagaa 167  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  47819405 acttattatatttacatagtttagggactaaattgaagaa 47819444  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 22559524 - 22559585
Alignment:
Q  60 aaaaattgtcaattttgtccctaacatcttaataaaagcgactaaattgacagattttatat 121  Q
    |||| |||||||| | ||| ||||||||||||||  || |||||||||||| ||||||||||    
T  22559524 aaaatttgtcaatatagtctctaacatcttaatagcagagactaaattgaccgattttatat 22559585  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 36467319 - 36467372
Alignment:
Q  9 aatttagtacctaaactgtataaatacaataaatattccctaaagtatataaaa 62  Q
    |||||||| | |||||| |||||||| ||||| || ||||||||||||||||||    
T  36467319 aatttagttcataaactatataaatataataactagtccctaaagtatataaaa 36467372  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 36031058 - 36031123
Alignment:
Q  45 tccctaaagtatataaaaaattgtcaattttgtccctaacatcttaataaaagcgactaaattgac 110  Q
    |||||||||||||| |||||  |||||||| || |||||||||||||||  |  ||||||||||||    
T  36031058 tccctaaagtatatgaaaaacagtcaatttagttcctaacatcttaatagcatggactaaattgac 36031123  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 26634596 - 26634636
Alignment:
Q  123 ggacaacttatcatatttacatagtttagggactaaattga 163  Q
    ||||||||||| |||||||||||||||| ||| ||||||||    
T  26634596 ggacaacttattatatttacatagtttaaggattaaattga 26634636  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 54254014 - 54254062
Alignment:
Q  68 tcaattttgtccctaacatcttaataaaagcgactaaattgacagattt 116  Q
    ||||||| |||||||||||||||||| ||| ||| |||||||| |||||    
T  54254014 tcaatttagtccctaacatcttaatagaagggacgaaattgacggattt 54254062  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 28306860 - 28306808
Alignment:
Q  70 aattttgtccctaacatcttaataaaagcgactaaattgacagattttatata 122  Q
    ||||| ||||||||||| ||||||  || |||||| |||||||||||||||||    
T  28306860 aatttagtccctaacattttaatatcagagactaatttgacagattttatata 28306808  T

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