View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_low_17 (Length: 275)

Name: NF21070_low_17
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_low_17
NF21070_low_17
[»] chr2 (2 HSPs)
chr2 (13-275)||(37627205-37627467)
chr2 (13-275)||(37618791-37619054)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 37627467 - 37627205
Alignment:
Q  13 caagcaagaaacaacagttagtccatgttctttttgaattctatatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgtattga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37627467 caagcaagaaacaacagttagtccatgttctttttgaattctatatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgtattct 37627368  T
Q  113 ggaagttgctccattccatcaaggtcccatctgcaaaacataaagtttagtttagcatggttactttataataatgtacctagttaatcaagattaaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37627367 ggaagttgctccattccatcaaggtcccatctgcaaaacataaagtttagtttagcatggttaatttataataatgtacctagttaatcaagattaaata 37627268  T
Q  213 catacaaattctaccgaagcaaaccttttaattgcctttgtgaaaagaacaagatcctctaat 275  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627267 catacaaattctactgaagcaaaccttttaattgcctttgtgaaaagaacaagatcctctaat 37627205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 37619054 - 37618791
Alignment:
Q  13 caagcaagaaacaacagttagtccatgttctttttgaattctatatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgtattga 112  Q
    |||| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37619054 caagtaagaaacaacagttagtccatgttctttttggattttgtatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgtattct 37618955  T
Q  113 ggaagttgctccattccatcaaggtcccatctgcaaaacataaagtttagtttagcatggttactttataataatgtaccta--gttaatcaagattaaa 210  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | ||  |||  |||||| ||| |||||    
T  37618954 ggaagttgatccattgcatcaaggtcccacctgcaaaacataaagttcagtttagcatggttaatttataatta-gtttctatcgttaattaagtttaaa 37618856  T
Q  211 tacatacaaattctaccgaagcaaaccttttaattgcctttgtgaaaagaacaagatcctctaat 275  Q
    |||||||||| ||||  |||||  ||||||||||||||||||| ||||||||||| || ||||||    
T  37618855 tacatacaaaatctatagaagcgtaccttttaattgcctttgtaaaaagaacaagttcatctaat 37618791  T

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