View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21070_low_24 (Length: 237)
Name: NF21070_low_24
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23506626 - 23506846
Alignment:
| Q |
1 |
atctacttcataataatttgcaaagcaagggcatttttggcaatgaaaaacaaactctacatgagtatcccaaatctaaagtcccctacattgtatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23506626 |
atctacttcataataatttgcaaagcaagggcatttttggcaatgaaaaacaaactatacatgagtatcccaaatctaaagtctcctacattgtatataa |
23506725 |
T |
|
| Q |
101 |
ggaagcctctttagtcccacctcatacaagtttacaatcaccatttagaaactctctttagatccattttcactctacacaagaaagttgaaaatatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23506726 |
ggaagcctctttagtcccacctcatacaagttgacaatcaccatttataaactctctttagatccattttcactctacacaagaaagttgaaaatatgaa |
23506825 |
T |
|
| Q |
201 |
tcaactcaattcccatagaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23506826 |
tcaactcaattcccatagaat |
23506846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University