View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_low_3 (Length: 593)

Name: NF21070_low_3
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_low_3
NF21070_low_3
[»] chr7 (5 HSPs)
chr7 (446-593)||(27658121-27658268)
chr7 (14-105)||(33602264-33602355)
chr7 (171-284)||(33602421-33602528)
chr7 (309-368)||(27656844-27656903)
chr7 (18-63)||(33602132-33602177)
[»] chr5 (5 HSPs)
chr5 (446-585)||(37605804-37605941)
chr5 (458-585)||(33360981-33361104)
chr5 (458-585)||(5742432-5742556)
chr5 (305-368)||(37606029-37606092)
chr5 (306-348)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (458-585)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (458-585)||(18085257-18085380)
chr6 (305-368)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (306-343)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 446 - 593
Target Start/End: Original strand, 27658121 - 27658268
Alignment:
Q  446 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 545  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  546 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtct 593  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27658221 ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtct 27658268  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 33602264 - 33602355
Alignment:
Q  14 ctaaaacgaaattgctctgttacgttgattttccaaatccaaaactacaagcaaataataaacacttaccaatttcggattcaccattcatg 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602264 ctaaaacgaaattgctctgttacgttgattttccagatccaaaactacaagcaaataataaacacttaccaatttcggattcaccattcatg 33602355  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 33602421 - 33602528
Alignment:
Q  171 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacggttagaagtatgagctggcaaatagcgaaatagtgaaatgaaatattaaacga 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||    
T  33602421 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacgattagaagtatgagctggcaaatagc------atgaaatgaaatattaaacga 33602514  T
Q  271 ttaaatatgttttt 284  Q
    ||||||||||||||    
T  33602515 ttaaatatgttttt 33602528  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  309 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 368  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 33602132 - 33602177
Alignment:
Q  18 aacgaaattgctctgttacgttgattttccaaatccaaaactacaa 63  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  33602132 aacgaaattgctctgttacgttgattttccagatccaaaactacaa 33602177  T

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Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 446 - 585
Target Start/End: Complemental strand, 37605941 - 37605804
Alignment:
Q  446 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 545  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  546 ttgtacagtaccaccctctcatgctattttcggtcactcc 585  Q
    ||||||||| |||||  |||||||||||||||||| ||||    
T  37605841 ttgtacagtgccacc--ctcatgctattttcggtcgctcc 37605804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 585
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
Q  458 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 557  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 33361008  T
Q  558 accctctcatgctattttcggtcactcc 585  Q
    | |||||||||||| |||||||||||||    
T  33361007 agcctctcatgcta-tttcggtcactcc 33360981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 458 - 585
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
Q  458 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 557  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||   |||||||||||| |||| ||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc 5742528  T
Q  558 accctctcatgctattttcggtcactcc 585  Q
    ||||||||||||||||| | ||||||||    
T  5742529 accctctcatgctatttccagtcactcc 5742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 37606092 - 37606029
Alignment:
Q  305 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 368  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606092 caggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  306 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 348  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 585
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
Q  458 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 557  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 1255  T
Q  558 accctctcatgctattttcggtcactcc 585  Q
    | |||||||||||| |||||||||||||    
T  1254 agcctctcatgcta-tttcggtcactcc 1228  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 585
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
Q  458 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 557  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 18085284  T
Q  558 accctctcatgctattttcggtcactcc 585  Q
    | |||||||||||| |||||||||||||    
T  18085283 agcctctcatgcta-tttcggtcactcc 18085257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 31559483 - 31559546
Alignment:
Q  305 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 368  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559483 caggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  306 aggaatgataagtaaacacaaaaatacaaacacaaaaa 343  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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