View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21070_low_4 (Length: 520)
Name: NF21070_low_4
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 12122635 - 12122140
Alignment:
| Q |
17 |
tggtgaagctgaaaatcccggagcatcaagttgccggtcaccaagcaaaaactggaatcctaggtccactgatagacgattctggaaaattctacaaacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122635 |
tggtgaagctgaaaatcccggagcatcaagttgccggtcaccaagcaaaaactggaatcctaggtccactgatagacgattctggaaaattctacaaacc |
12122536 |
T |
|
| Q |
117 |
tcttcaaggcgacgaacgaggttccaacgaacttgctttctacacctccctctattctgacccacgcatcccctccaacattctcaaactcttcccttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |
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| T |
12122535 |
tcttcaaggcgacgaacgaggttccaacgaacttgctttctatacctccctctattccgatccacgcatcccctccaacattctcaaattcttcccttct |
12122436 |
T |
|
| Q |
217 |
tttcatggcagtgaaaccatcgacgcctccgacggttctggtctacacccccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcg |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122435 |
tttcatggcagtgaaaccattgacgcctccgacggttctggtctacacccccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcg |
12122336 |
T |
|
| Q |
317 |
tcgacatcaagattggttctcgaacatggcaccctcaatcctccgaagattacattcggaaatgcctccagaaagatcgagaatcttctacgataaaatt |
416 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122335 |
tcgacatcaagattggttctcgaacatggcaacctcaatcctccgaagattatattcggaaatgcctccagaaagatcgagaatcttctacgataaaatt |
12122236 |
T |
|
| Q |
417 |
agggtttagaatctctgggttgaggtctgtgggtcccagtaacaaattatggcagcctcatagaaagcttcttatggatctatctgctgatgatgt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122235 |
agggtttagaatctctgggttgaggtctgtgggtcccagtaacaaattatggcagcctcatagaaagcttcttatggatctatctgctgatgatgt |
12122140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 14692154 - 14691659
Alignment:
| Q |
17 |
tggtgaagctgaaaatcccggagcatcaagttgccggtcaccaagcaaaaactggaatcctaggtccactgatagacgattctggaaaattctacaaacc |
116 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |
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| T |
14692154 |
tggtgaagctgaaaatcccagagcaccaagttgcaggtcaccaagcaaaaaacggaatcctaggtcctctaatagacgattctggaaagttctacaaacc |
14692055 |
T |
|
| Q |
117 |
tcttcaaggcgacgaacgaggttccaacgaacttgctttctacacctccctctattctgacccacgcatcccctccaacattctcaaactcttcccttct |
216 |
Q |
| |
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|||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| ||| |||||||||||||| ||||||||||| |
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| T |
14692054 |
tcttcaagacgatgaacgaggttccaatgaacttgctttctacacatccctctattccgatccacgcattcccaccaacattctcaaattcttcccttct |
14691955 |
T |
|
| Q |
217 |
tttcatggcagtgaaaccatcgacgcctccgacggttctggtctacacccccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcg |
316 |
Q |
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||||| |||| | ||||| |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||| | || |||| |
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| T |
14691954 |
tttcacggcactcaaaccgtcgatgcctccgacggatctggtctacacccccacctcgtcttagaagacattgtcagcaattacaccaaccctgccgtcg |
14691855 |
T |
|
| Q |
317 |
tcgacatcaagattggttctcgaacatggcaccctcaatcctccgaagattacattcggaaatgcctccagaaagatcgagaatcttctacgataaaatt |
416 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
14691854 |
tcgacatcaagatcggttcacgaacatggcacccacagtcctctgaagattacatccggaaatgcctccagaaagatcgagaatcttctagtatcaaatt |
14691755 |
T |
|
| Q |
417 |
agggtttagaatctctgggttgaggtctgtgggtcccagtaacaaattatggcagcctcatagaaagcttcttatggatctatctgctgatgatgt |
512 |
Q |
| |
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||||||||||||||| || |||||||| |||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||| |
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| T |
14691754 |
agggtttagaatctccggtttgaggtcagtgggtcccactaatcaattatggcagcctcataaaaagtttcttatggatctatctgttgatgatgt |
14691659 |
T |
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