View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21070_low_5 (Length: 514)
Name: NF21070_low_5
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_5 |
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| [»] scaffold0878 (1 HSPs) |
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| [»] scaffold0220 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 15115461 - 15115960
Alignment:
| Q |
1 |
cttaattactgccacgtcatcaaattactgacgtggctctgttaattggttaagtgacaatgctgactcaacaaaaatgacttgaatggacagttttacc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115461 |
cttaattactaccacgtcatcaaattactgacgtggctatgttaattggttaagtgacaatgctgactcaacaaaaatgacttgaatggacagttttacc |
15115560 |
T |
|
| Q |
101 |
cctaaagaaatcacctaacatggaaattgcatttttgctcttcttcctcccttaactctttttcctcgccgtctccctccatcccttacacaccttcgcc |
200 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
15115561 |
cctaaagaagtcacctaacatggaaattgcatttttgctcttcttcctcccttaactctttttcctcgtcgtctccttccatcccttacacaccttcgcc |
15115660 |
T |
|
| Q |
201 |
gcccacaacaatctcgctggtggtaacctcctcacaccttcacatcaccattcttaccctttggatacagatctggaaatcgacgaatctggtgaaggaa |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15115661 |
gcccacaacaatctcgccggtggtaacctcctcacaccttcacatcaccattcttaccctttggatacagatctggaaatcgatgaatctggtgaaggaa |
15115760 |
T |
|
| Q |
301 |
cacatggttctagaatctttgaagttgttctaccattcataccctttggatccaaatctggaaatcgacgacggtgacagagaccttcattttgcaactc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
15115761 |
cacatggttctagaatctttgaagttgttctaccattcataccctttggatccaaatctgaaaatcgacgacggtgacagagaccttcattttgcaattc |
15115860 |
T |
|
| Q |
401 |
ttccttcgaacactgtaaatcaatcgattaaaacagctgaatatgacacacgttaatcctgtgcggggcttcttctccgcgga-ttcttctttgcctttg |
499 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15115861 |
ttccttcgaacactgtaaatcaatctattaaaatagctgaataggacccatgttaatcctgtgcggggcttcttctccgcggatttcttctttgcctttg |
15115960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 31329359 - 31329287
Alignment:
| Q |
162 |
ttcctcgccgtctccctccatcccttacacaccttcgccgcccacaacaatctcgctggtggtaacctcctca |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| || ||||||||||||| |
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| T |
31329359 |
ttcctcgccgtctccctccatcccttacacaccttcgccgccgataacaatcccgccggcggtaacctcctca |
31329287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 27891816 - 27891744
Alignment:
| Q |
162 |
ttcctcgccgtctccctccatcccttacacaccttcgccgcccacaacaatctcgctggtggtaacctcctca |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| || ||||||||||||| |
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| T |
27891816 |
ttcctcgccgtctccctccatcccttacacaccttcgccgccgataacgatcccgccggcggtaacctcctca |
27891744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0878 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0878
Description:
Target: scaffold0878; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2503 - 2431
Alignment:
| Q |
162 |
ttcctcgccgtctccctccatcccttacacaccttcgccgcccacaacaatctcgctggtggtaacctcctca |
234 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||| ||| ||| || ||||||||||||| |
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| T |
2503 |
ttcctcgccgtctccctccatcccttacacaccttcaccgccgataacgatcccgccggcggtaacctcctca |
2431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 55761498 - 55761416
Alignment:
| Q |
55 |
tgacaatgctgactcaacaaaaatgacttgaatggacagttttacccctaaagaaatcacctaacatggaaattgcatttttgc |
138 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| ||| ||| ||| |||||| ||||||||| |
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| T |
55761498 |
tgacaatgatgattcaacaaaaatgacttgaa-ggacaaatttactcctaaagaagtcagctaccattgaaattacatttttgc |
55761416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 8747531 - 8747560
Alignment:
| Q |
8 |
actgccacgtcatcaaattactgacgtggc |
37 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8747531 |
actgccacgtcatcaaattactgacgtggc |
8747560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23353 - 23401
Alignment:
| Q |
1 |
cttaattactgccacgtcatcaaattactgacgtggctctgttaattgg |
49 |
Q |
| |
|
|||||| |||||||||||| || || |||||||||||||||||||||| |
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| T |
23353 |
cttaatcactgccacgtcagtaatttgctgacgtggctctgttaattgg |
23401 |
T |
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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 238377 - 238425
Alignment:
| Q |
1 |
cttaattactgccacgtcatcaaattactgacgtggctctgttaattgg |
49 |
Q |
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|||||| |||||||||||||| |||||||||||||| || |||||||| |
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| T |
238377 |
cttaatgactgccacgtcatctgattactgacgtggcgctattaattgg |
238425 |
T |
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