View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21070_low_6 (Length: 457)
Name: NF21070_low_6
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21070_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 222 - 435
Target Start/End: Complemental strand, 47661368 - 47661155
Alignment:
| Q |
222 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataatgtaaaagacgatggcaaaaatcata |
321 |
Q |
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| T |
47661368 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataatgtaaaagacgatggcaaaaatcata |
47661269 |
T |
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| Q |
322 |
atgagtgtaaccctgcataaagaagagatgaagaaacattagaaatttaaatttaaataatcaaaaagcttaacctcaacgtttcgaaattgacacttac |
421 |
Q |
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| T |
47661268 |
atgagtgcaaccctgcataaagaagagatgaagaaacattagaaatttaaatttaaataatcaaaaagcttaacctcaacgtttagaaattgacacttac |
47661169 |
T |
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| Q |
422 |
gttagcctaacatt |
435 |
Q |
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| T |
47661168 |
gttagcctaacatt |
47661155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 47661587 - 47661397
Alignment:
| Q |
1 |
atagggaaaaaattacagtgttcctttagaattgtaaatatacccatacaatagggtatcttgcaatgcaaactcatccacattgcgtaacatttttcta |
100 |
Q |
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| T |
47661587 |
atagggaaaaaatta--gtgttccttcagaattgtaaatatacccatacaatagggtatcttgcaatgcaaactcatccacattgcgtaacaattttcta |
47661490 |
T |
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| Q |
101 |
aaacgtgcactatcctaaaacggtaacattgcatcccaataaatacaagtatgaatatttcttttttctttgacccagtatacattattggtc |
193 |
Q |
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| T |
47661489 |
aaacgtgcactagcctaaaacggtaacattgcatcccaataaatacaagtatgaatatttcttttttctttgacccagtatacattattggtc |
47661397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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