View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21070_low_8 (Length: 436)

Name: NF21070_low_8
Description: NF21070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21070_low_8
NF21070_low_8
[»] chr7 (3 HSPs)
chr7 (22-421)||(25679453-25679853)
chr7 (64-98)||(654704-654738)
chr7 (64-100)||(27312318-27312354)
[»] chr5 (3 HSPs)
chr5 (65-98)||(41084147-41084180)
chr5 (64-100)||(21236361-21236397)
chr5 (65-97)||(36895590-36895622)
[»] chr3 (2 HSPs)
chr3 (64-97)||(32094756-32094789)
chr3 (64-100)||(15566499-15566535)
[»] chr2 (3 HSPs)
chr2 (158-259)||(4926763-4926864)
chr2 (64-100)||(15038121-15038157)
chr2 (64-100)||(28194137-28194173)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 22 - 421
Target Start/End: Original strand, 25679453 - 25679853
Alignment:
Q  22 taaattctaggttacttttcaattcttagctatgnnnnnnnng--aaaactcggtatccgatgcaagaaccgactaatctgttcaattcttagctactaa 119  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  25679453 taaattctaggttacttttcaattcttagctatgtttttttttttaaaactcggtatccgatgcaagaaccgattaatctgttca-ttcttagctactaa 25679551  T
Q  120 ttataagaaaaatttacataaatgttatgtgtgtggaacttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25679552 ttataagaaaaatttacataaatgttatgtgtgtggaacttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggag 25679651  T
Q  220 tccaacgtagcctaggaaacttggatctaacataaggtctcactgatgatttcttctcacaattctcttctattgtactattgcttgagcttattcctcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25679652 tccaacgtagcctaggaaacttggatctaacataaggtctcaccgatgatttcttctcacaattctcttctattgtactattgcttgagcttattcctcc 25679751  T
Q  320 attgttgatgttttgcttattactttcctcatcttcatttccttcactaatttcacaaccatcttcattaattgaaacacttgccttggaacatgctgat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  25679752 attgttgatgttttgcttattactttcctcatcttcatttccttcactaatttcacaaccatcttcattaattgaaatacttgccttggaacattctgat 25679851  T
Q  420 cc 421  Q
    ||    
T  25679852 cc 25679853  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 654704 - 654738
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatc 98  Q
    |||||||||||||||||| ||||||||||||||||    
T  654704 gaaaactcggtatccgatccaagaaccgactaatc 654738  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 27312354 - 27312318
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatctg 100  Q
    |||||||||||||||||| |||||| |||||||||||    
T  27312354 gaaaactcggtatccgatccaagaatcgactaatctg 27312318  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 41084180 - 41084147
Alignment:
Q  65 aaaactcggtatccgatgcaagaaccgactaatc 98  Q
    ||||||||||||||||| ||||||||||||||||    
T  41084180 aaaactcggtatccgattcaagaaccgactaatc 41084147  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 21236361 - 21236397
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatctg 100  Q
    |||||||||||||||||| |||||| |||||||||||    
T  21236361 gaaaactcggtatccgattcaagaatcgactaatctg 21236397  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 36895622 - 36895590
Alignment:
Q  65 aaaactcggtatccgatgcaagaaccgactaat 97  Q
    ||||||||||||||||| |||||||||||||||    
T  36895622 aaaactcggtatccgatccaagaaccgactaat 36895590  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 32094756 - 32094789
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaat 97  Q
    |||||||||||||||||| |||||||||||||||    
T  32094756 gaaaactcggtatccgatccaagaaccgactaat 32094789  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 15566499 - 15566535
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatctg 100  Q
    |||||||||||||||||| |||||| |||||||||||    
T  15566499 gaaaactcggtatccgatccaagaatcgactaatctg 15566535  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 4926763 - 4926864
Alignment:
Q  158 cttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggagtccaacgtagcctaggaaacttggatctaacataaggt 257  Q
    |||||| ||| | |||||||||||||  |||||||| | ||||  |  |||||| ||||||||||| | || |||||| | |||||||||||||||| ||    
T  4926763 cttactttctagaccaccaagtctttcaacagcatgcaaaaaagaatgatgaagctcaggagtccaccttaacctaggcatcttggatctaacataatgt 4926862  T
Q  258 ct 259  Q
    ||    
T  4926863 ct 4926864  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 15038157 - 15038121
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatctg 100  Q
    |||||||||||||||||| |||||| |||||||||||    
T  15038157 gaaaactcggtatccgatccaagaatcgactaatctg 15038121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 28194137 - 28194173
Alignment:
Q  64 gaaaactcggtatccgatgcaagaaccgactaatctg 100  Q
    |||||||||||||||||| |||| |||||||||||||    
T  28194137 gaaaactcggtatccgatccaaggaccgactaatctg 28194173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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