View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_high_2 (Length: 429)
Name: NF21071_high_2
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 38661889 - 38662293
Alignment:
| Q |
30 |
cttcatgaaaagttacatttaatagtatggatacgagttgagtgcggtcacaatcccgtggccgcatgcagtcaagctcaatattttagatttcaaagaa |
129 |
Q |
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| T |
38661889 |
cttcatgaaaagttacatttaatagtatggatatgagttgagtgcggtcacaaccccgtggccgcatgcagtcaagctcaatattttagatttcaaagaa |
38661988 |
T |
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| Q |
130 |
tctgcgttgaaatctggaatattttatcttgatcaaacgatctagatgtg---------------------tacaatccaaattttcaattaatgagctt |
208 |
Q |
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| T |
38661989 |
tatgcgttgaaatctggaatatttgatcttgatcaaacgatctagatgtggttgactgcactcacaccacgtagaatccaaattttcaattaataagctt |
38662088 |
T |
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| Q |
209 |
tatactttatatattgttgtaatggtacatgatttaatgttatttcaaacaaaacnnnnnnnctaatgttatttttattgtattttattcagcattggta |
308 |
Q |
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| T |
38662089 |
tatactttatatattgttgtaatggtacatgatttaatgttatttcaaacaaaacaaaaaatctaatgttatttttattgtattttattcagcattggta |
38662188 |
T |
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| Q |
309 |
gtttgggaaaccacaactcaagagcatgtgtatcaaacataacagtgagggactcagttataagggtatcagataatggggtaagaattaagacatggca |
408 |
Q |
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| T |
38662189 |
gtttgggaaaccacaactcaagagcatgtgtatcaaacataacagtgagggactcagttataagggtatcagataatggggtaagaatcaagacatggca |
38662288 |
T |
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| Q |
409 |
aggtg |
413 |
Q |
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| T |
38662289 |
aggtg |
38662293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 45101618 - 45101503
Alignment:
| Q |
296 |
ttcagcattggtagtttgggaaaccacaactcaagagcatgtgtatcaaacataacagtgagggactcagttataagggtatcagataatggggtaagaa |
395 |
Q |
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| T |
45101618 |
ttcagcataggtagtctaggaaatcacaacacgaaagcatgtgtatcaaacattacagtgagagactcgatcataaaaatgtcagataatggaatcagaa |
45101519 |
T |
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| Q |
396 |
ttaagacatggcaagg |
411 |
Q |
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| T |
45101518 |
tcaagacatggcaagg |
45101503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 38834662 - 38834744
Alignment:
| Q |
331 |
agcatgtgtatcaaacataacagtgagggactcagttataagggtatcagataatggggtaagaattaagacatggcaaggtg |
413 |
Q |
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| T |
38834662 |
agcatgtgtctcaaacttaacagtccgtgacacagtgataagagaatcagacaatggactaagaataaagacatggcaaggtg |
38834744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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