View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_high_6 (Length: 261)
Name: NF21071_high_6
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_high_6 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 13658620 - 13658866
Alignment:
| Q |
4 |
gaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgcctttttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13658620 |
gaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttg |
13658719 |
T |
|
| Q |
104 |
acacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagtagatttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13658720 |
acacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttg |
13658819 |
T |
|
| Q |
204 |
tgagtgaggtttggaagcttggattggatatgaaggatgtttgtgat |
250 |
Q |
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||||||| |||||||| ||||| ||||||||||| |||||||||||| |
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| T |
13658820 |
tgagtgatgtttggaaacttgggttggatatgaaagatgtttgtgat |
13658866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 13653154 - 13653393
Alignment:
| Q |
11 |
cttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgcctttttgacacata |
110 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||| ||||| |||||||||||||||||| ||||| || ||||||||||| ||||||||||||| |
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| T |
13653154 |
cttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacata |
13653253 |
T |
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| Q |
111 |
gtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagtagatttgtgagtga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
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| T |
13653254 |
gtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtga |
13653353 |
T |
|
| Q |
211 |
ggtttggaagcttggattggatatgaaggatgtttgtgat |
250 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
13653354 |
ggtttggaagcttggattggatatgaaagatgtttgtgat |
13653393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 13648096 - 13648338
Alignment:
| Q |
8 |
gagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgcctttttgacac |
107 |
Q |
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|||||||||||||||||| ||| || ||||| ||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||| |
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| T |
13648096 |
gagcttgaggaagggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacac |
13648195 |
T |
|
| Q |
108 |
atagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagtagatttgtgag |
207 |
Q |
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||| ||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13648196 |
ataatgggtggaattcaactttggaaagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgag |
13648295 |
T |
|
| Q |
208 |
tgaggtttggaagcttggattggatatgaaggatgtttgtgat |
250 |
Q |
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||| |||||||| ||||| ||||||||||| |||||||||||| |
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| T |
13648296 |
tgatgtttggaaacttgggttggatatgaaagatgtttgtgat |
13648338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 26672202 - 26672098
Alignment:
| Q |
98 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagta |
197 |
Q |
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||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||||| |||||||||| ||||||||| ||||||| |||| ||| |
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| T |
26672202 |
tttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgta |
26672103 |
T |
|
| Q |
198 |
gattt |
202 |
Q |
| |
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||||| |
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| T |
26672102 |
gattt |
26672098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 26901488 - 26901384
Alignment:
| Q |
98 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagta |
197 |
Q |
| |
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||||||||||||||||| |||||||| || || || ||||| | ||||||| || ||||| |||||||||| ||||||||| ||||||| |||| ||| |
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| T |
26901488 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgta |
26901389 |
T |
|
| Q |
198 |
gattt |
202 |
Q |
| |
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||||| |
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| T |
26901388 |
gattt |
26901384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 26943800 - 26943696
Alignment:
| Q |
98 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaacaaattaatagta |
197 |
Q |
| |
|
||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||||| |||||||||| ||||||||| ||||||| |||| ||| |
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| T |
26943800 |
tttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgta |
26943701 |
T |
|
| Q |
198 |
gattt |
202 |
Q |
| |
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||||| |
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| T |
26943700 |
gattt |
26943696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 20156908 - 20156862
Alignment:
| Q |
77 |
tcacacaaagcaattggtgcctttttgacacatagtggatggaattc |
123 |
Q |
| |
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||||| |||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
20156908 |
tcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 11686 - 11580
Alignment:
| Q |
87 |
caattggtgcctttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttattttgctgatcaaca |
186 |
Q |
| |
|
|||||||||| |||||||| ||| |||| |||||||| | | |||||||| || | ||||||||||||||| |||||||| |||||||| ||| | |
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| T |
11686 |
caattggtgcatttttgactcattgtggttggaattcagttcttgagagtgtagtgttgggtgtgcctatgattgcttggcctttgtttgctgagcaaaa |
11587 |
T |
|
| Q |
187 |
aattaat |
193 |
Q |
| |
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||||||| |
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|
| T |
11586 |
aattaat |
11580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 560503 - 560446
Alignment:
| Q |
79 |
acacaaagcaattggtgcctttttgacacatagtggatggaattctactttggagagt |
136 |
Q |
| |
|
|||||||||||||||||| ||||| || ||| |||| |||||||| | |||||||||| |
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|
| T |
560503 |
acacaaagcaattggtgcatttttaactcattgtggttggaattcaattttggagagt |
560446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 894534 - 894461
Alignment:
| Q |
87 |
caattggtgcctttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatt |
160 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||| ||| |||||||||||||||||| |||||||||||||||| |
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| T |
894534 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgatt |
894461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 36742436 - 36742492
Alignment:
| Q |
67 |
ggaagttttatcacacaaagcaattggtgcctttttgacacatagtggatggaattc |
123 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||| | |||||||||||||||||||| |
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|
| T |
36742436 |
ggaagttctatcaaacaaagctattggttgctttctaacacatagtggatggaattc |
36742492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 41545660 - 41545717
Alignment:
| Q |
75 |
tatcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttgga |
132 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||| || ||||| |
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| T |
41545660 |
tatcacacaaagcaataggtatttttttgacacattgtggatggaattcaacattgga |
41545717 |
T |
|
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