View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_low_2 (Length: 475)
Name: NF21071_low_2
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 37147864 - 37147399
Alignment:
| Q |
1 |
aaaagtaatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattgatttctcttaattaagagt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37147864 |
aaaaataatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattaatttctcttaattaagagt |
37147765 |
T |
|
| Q |
101 |
tcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcataccttttgctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37147764 |
tcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacctttagctac |
37147665 |
T |
|
| Q |
201 |
acaaaatcatattcaaaacaaaaggattatctttaaataaatacctctcagatnnnnnnnttgcagaaagtcagaaacattatgagtagaaaaggaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37147664 |
acaaaatcatattcaaaacaaaaggattatctctaaataaatacctctcagataaaaaaattgcagaaagtcagaaacattatgagtagaaaaggaatga |
37147565 |
T |
|
| Q |
301 |
agaaaaaatgattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacttgaactaacttaaaccataggattattaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37147564 |
agaaaaaatgattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacatgaactaacttaaaccataggattattaca |
37147465 |
T |
|
| Q |
401 |
tcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggcctttgcttct |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37147464 |
tcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgcttct |
37147399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 7894431 - 7894562
Alignment:
| Q |
53 |
ttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaa |
152 |
Q |
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|||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
7894431 |
ttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaattcacaatttcgttttcaatttcatccaa |
7894530 |
T |
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| Q |
153 |
caaacatcccttgtaatttatcctcttcaatt |
184 |
Q |
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| T |
7894531 |
caaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 35718141 - 35718220
Alignment:
| Q |
112 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
191 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctcttcaatttcatacc |
35718220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 35411163 - 35411082
Alignment:
| Q |
110 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
191 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||||||||| ||||| ||||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaattttatacc |
35411082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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