View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_low_5 (Length: 327)
Name: NF21071_low_5
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 59 - 292
Target Start/End: Complemental strand, 5419512 - 5419275
Alignment:
| Q |
59 |
tacgttttgcatcatgcataagttactttcagattaataattctcactatttaatcaaatgagatgagacttattgattaacgggtgaaaatacaattct |
158 |
Q |
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| T |
5419512 |
tacgttttatatcatgcacaaattacttttagattaataattctcactatttaatcaaatgagatgagacttattgattaactggtgaaaatacacttcc |
5419413 |
T |
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| Q |
159 |
atatgatgcaaaattattttatttttgtaccttagagaaagccaaacttaagtactattaattatttacttttgcgatggata----nnnnnnnnaagag |
254 |
Q |
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| T |
5419412 |
atatgatgcaaaattattttatttttgtaccttagagaaagccaaacttaagtactattaattattttcttttgcgatggatatttttttttttaaagag |
5419313 |
T |
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| Q |
255 |
ttgcatttgttgtaattgatgccggcatatacaatata |
292 |
Q |
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| T |
5419312 |
ttgcatttgttgtaattgatgccggcatatacaatata |
5419275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5427977 - 5427746
Alignment:
| Q |
1 |
atgcgaattgcaagcctttacccaaccactagtaaattaataatatgtgcatgtcggatacgttttgcatcatgcataagttactttcagattaataatt |
100 |
Q |
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| T |
5427977 |
atgcgaattgcaagc-tttacccaaccaatagtatgtgaataatatgtgcaagttagatacgttttacatcatgtacaaattacttttggattaataatt |
5427879 |
T |
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| Q |
101 |
ctcactatttaatcaaatgagatgagacttattgattaacgggt--gaaaatacaattctatatgatgcaaaattattttatttttgtaccttagagaaa |
198 |
Q |
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| T |
5427878 |
ctcactatttaatcaaatgagatgagacttattgattaaggggtaaaaaaatacactttcatatgatgcaaaattactatatatgtgtaccatagagaaa |
5427779 |
T |
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| Q |
199 |
gccaaacttaagtactattaattatttactttt |
231 |
Q |
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| T |
5427778 |
gccaaacttaaatactattaattattttctttt |
5427746 |
T |
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