View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_low_8 (Length: 243)
Name: NF21071_low_8
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 52985990 - 52986215
Alignment:
| Q |
1 |
ttttactcccttcaaggttttttccacacaaattaagaaatgcaatggtgctgtcaaaaaacattacccatttaccaaactaaccttattcactattggt |
100 |
Q |
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| T |
52985990 |
ttttactcccttcaaggttttttccacacaaattaagaaatgcaacggtgctgtcaaaaaacattacccatttaccaaactaaccttattcgctattggt |
52986089 |
T |
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| Q |
101 |
gtatttctcaccatcttaaatacaaattgagtatgatgctttgaaagcagggtacaaattaagtattagagggcaaaattggaaggaaaaaagaattaat |
200 |
Q |
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| T |
52986090 |
gtatttctcaccatcttaaatacaaattgagtatgatgctttgaaagtagggtactaattaagtattagagggcaaaattggaaggaaaaaagaattaat |
52986189 |
T |
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| Q |
201 |
cttacattggaaggtgtaaatgacat |
226 |
Q |
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| T |
52986190 |
cttacattggaaggtgtaaatgacat |
52986215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 9420024 - 9420109
Alignment:
| Q |
22 |
ttccacacaaattaagaaatgcaatggtgctgtcaaaaaacattacccatttaccaaactaaccttattcactattggtgtatttc |
107 |
Q |
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| T |
9420024 |
ttccacacatattaagaaatgcaatagtgttgtctataaacatgacacttttactaaaatagccttgttaactattggtgcatttc |
9420109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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