View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21071_low_9 (Length: 240)
Name: NF21071_low_9
Description: NF21071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21071_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 13658417 - 13658621
Alignment:
| Q |
36 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
135 |
Q |
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| T |
13658417 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
13658516 |
T |
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| Q |
136 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
235 |
Q |
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| T |
13658517 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
13658616 |
T |
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| Q |
236 |
attga |
240 |
Q |
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||||| |
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| T |
13658617 |
attga |
13658621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 13647889 - 13648091
Alignment:
| Q |
36 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
135 |
Q |
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| T |
13647889 |
aagagcaatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaa |
13647988 |
T |
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| Q |
136 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
235 |
Q |
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| T |
13647989 |
tgaagagagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggatt |
13648088 |
T |
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| Q |
236 |
att |
238 |
Q |
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||| |
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| T |
13648089 |
att |
13648091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 13652949 - 13653144
Alignment:
| Q |
41 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
140 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| | |
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| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
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| Q |
141 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggacta |
236 |
Q |
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| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagacta |
13653144 |
T |
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