View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_high_10 (Length: 380)
Name: NF21072_high_10
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_10 |
 | |
|
| [»] scaffold0006 (4 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 211393 - 211041
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
211393 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
211294 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
211293 |
aatttatcaacccattgcagtttgttaccttcaaataggtcatgtaactaaaggtaacagaggatggaaccaactttatcagactggaacactcgtaaac |
211194 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||||| ||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| || |
|
|
| T |
211193 |
atcaatgcgttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaagcttgggcagctcccataagtccaactctcttagt |
211094 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaagta |
367 |
Q |
| |
|
| ||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
211093 |
cgcggactaaattgaggtgcactctcaacacttgtaagtacctcctgcaagta |
211041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 4342 - 3990
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342 |
tcatcttctttaccgttcactatatcctcaagccaataacacctttgaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
4243 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| |||||| || ||||||||| || ||||||||||||| || ||||| |
|
|
| T |
4242 |
aatttatcaacccattgcagcttgttacctccaaataggtcatgtaactaaaggtaacagaggacggaaccaactttatcagactggaacattggtaaac |
4143 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||||||| |||| | |||||| ||||||||||||||| |
|
|
| T |
4142 |
atcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatttaagcttgggcaggtcccataagtccaactctctgagc |
4043 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaagta |
367 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
4042 |
cccggggtaaattgagttgtactctttacacttgtaagtacctcctgcaagta |
3990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 175905 - 175608
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175905 |
tcatcttctttaccattcactatatcctcaagccaattacacatttcaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
175806 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| || ||||||||| || ||||||||||||| || |||| |
|
|
| T |
175805 |
aatttatcaacccattgcagtttgttacctccaaataggtcatgtaactaaaggtaacagaggacggaaccaactttatcagactggaacattggcaaac |
175706 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctga |
312 |
Q |
| |
|
|| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
175705 |
atcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaagcttgtgcagctgcaataattccaactctctga |
175608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 191313 - 191016
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191313 |
tcatcttctttaccattcactatatcctcaagccaattacacatttcaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
191214 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| || ||||||||| || ||||||||||||| || |||| |
|
|
| T |
191213 |
aatttatcaacccattgcagtttgttacctccaaataggtcatgtaactaaaggtaacagaggacggaaccaactttatcagactggaacattggcaaac |
191114 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctga |
312 |
Q |
| |
|
|| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
191113 |
atcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaagcttgtgcagctgcaataattccaactctctga |
191016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 20768130 - 20768399
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20768130 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
20768229 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
| ||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20768230 |
attttttcaacccattgcagtttgttacctccaaaaaggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
20768329 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
20768330 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaagcttg |
20768399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 20780560 - 20780851
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20780560 |
tcatcttctttaccattcactatatcctcaagccaattacacattttaatcttcattgttgcgagtttgacaagactctttgctgttgagtgtgttatca |
20780659 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20780660 |
aatttttcaacccattgcagtttgttacctccaaaaaggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
20780759 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaact |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||| |||| ||||| ||||| |
|
|
| T |
20780760 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaagcttgctcaggtgccgtaatttcaact |
20780851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 20770766 - 20771035
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20770766 |
tcatcttctttaccattcactatatcctcaagccaattacacattttaatcttcattgttgcgagtttgacaagactctttgctgttgagtgtgttatca |
20770865 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20770866 |
aatttttcaacccattgcagtttgttacctccaaaaaggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
20770965 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
20770966 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacattgaagcttg |
20771035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 20848762 - 20849028
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848762 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
20848861 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
20848862 |
aatttttcaacccattgcagtttgttacctccaaattggtcatgtaactaaaggtaacagaggatggaactaacattatcagactggaacactgatgaac |
20848961 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagc |
281 |
Q |
| |
|
|||||||| || ||| |||||||||||||| ||||||| ||||||||| |||||| ||| |||| |
|
|
| T |
20848962 |
ccgaatgcttttaacaaaatgtagaactgggtcaatttgaactccttctttgcatatacattgaagc |
20849028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 20777986 - 20778193
Alignment:
| Q |
77 |
gagtttgacaagactctttgctgttgagtgtgttatcaaatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
20777986 |
gagtttgacaagactctttgctgttgagtgtgttatcaattttttcaacccattgcagtttgttacctccaaaaaggtcatataactaaaggaaacagaa |
20778085 |
T |
|
| Q |
177 |
gatggaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
20778086 |
gatggaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttgcatatacatt |
20778185 |
T |
|
| Q |
277 |
taagcttg |
284 |
Q |
| |
|
||||||| |
|
|
| T |
20778186 |
gaagcttg |
20778193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 49 - 281
Target Start/End: Original strand, 20840702 - 20840934
Alignment:
| Q |
49 |
aattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaaatttatcaacccattgcagtttgttaccttcaa |
148 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||| ||| |||||||||| |||| || |||||||||| ||||||||||| ||||||| |||| ||| |
|
|
| T |
20840702 |
aattacacattttaatcttcattgttgtcaatttgacgagaatctttgctgtcgagtatgatatcaaatttttcaacccattgtagtttgtaacctccaa |
20840801 |
T |
|
| Q |
149 |
atcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaacataaatgctttcaagaaactgtagaactgggtcc |
248 |
Q |
| |
|
|| |||||| |||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||| |||||||| || ||| ||||||||||||| |
|
|
| T |
20840802 |
ataggtcatgtaactaaaggtaacagaggatggaactaacattatcagactggaacactgatgaacccgaatgcttttaacaaaatgtagaactgggtta |
20840901 |
T |
|
| Q |
249 |
atttgaaatccttctttacatatatatttaagc |
281 |
Q |
| |
|
||||||| ||||||||| |||||| ||| |||| |
|
|
| T |
20840902 |
atttgaactccttctttgcatatacattgaagc |
20840934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 15895175 - 15895524
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15895175 |
tcatcttctttaccgttcactatatcctcaagccaattacacattgtaatcttcattgttatgagtttgacaagactctttgctgttgagtgtgttatca |
15895274 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||| |||||| |||||||||| ||| || |||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
15895275 |
aatttttcaacccattgcagcttgttacctccaaataggtcatgtaactaaaggtaactgaggatggaaccaactttatcagactggaacactggtaaac |
15895374 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||| |
|
|
| T |
15895375 |
atcaatgctttcaataaaatgtagaaaaggatccatttgaaatccttctttacatatatatttaagcttgtgcaactgccataatttcaattctttgagt |
15895474 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaa |
364 |
Q |
| |
|
| |||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15895475 |
cgcgggctaaatcgaggtgtactctccacacttgtaagtacctcctgcaa |
15895524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 13597057 - 13596705
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13597057 |
tcatcttctttaccgttcactatatcctcaagccaataacacctttgaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
13596958 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| |||||| || ||||||||| || ||||||||||||| || ||||| |
|
|
| T |
13596957 |
aatttatcaacccattgcagcttgttacctccaaataggtcatgtaactaaaggtaacagaggacggaaccaactttatcagactggaacattggtaaac |
13596858 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||||||| |||| | |||||| ||||||||||||||| |
|
|
| T |
13596857 |
atcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatttaagcttgggcaggtcccataagtccaactctctgagc |
13596758 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaagta |
367 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
13596757 |
cccggggtaaattgagttgtactctttacacttgtaagtacctcctgcaagta |
13596705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 13553426 - 13553129
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13553426 |
tcatcttctttaccgttcactatatccaaaagccaattacacatttcaatcttcattgttgtgagtttgacaagactatttgctgttgagtgtgttatca |
13553327 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| |||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
13553326 |
aatttatcaacccattgcagtttgttaccttcaaataggtcatgtaactaaaggtagcagaggatggaaccaactttatcagactggaacactcataaac |
13553227 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctga |
312 |
Q |
| |
|
|| ||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553226 |
attaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctga |
13553129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 13678323 - 13678026
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13678323 |
tcatcttctttaccattcactatatcctcaagccaattacacatttcaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
13678224 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| || ||||||||| || ||||||||||||| || |||| |
|
|
| T |
13678223 |
aatttatcaacccattgcagtttgttacctccaaataggtcatgtaactaaaggtaacagaggacggaaccaactttatcagactggaacattggcaaac |
13678124 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctga |
312 |
Q |
| |
|
|| ||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13678123 |
atcaatgctttcaagaaaatgcagaaaaggatccatttgaaatccttctttacatatatatttaagcttgtgcagctgcaataattccaactctctga |
13678026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 20378761 - 20378471
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
20378761 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactcgtggctgttgagtgtgttatca |
20378662 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
20378661 |
aatttatcaacccattgcagtttgttacctccaaataggtcaaataactaaagctaacagaggatggaaccaactttgtcagactggaacactgagaaac |
20378562 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaac |
305 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
20378561 |
atcaatgctttcaagaaactgtagaacggggtccatctgaaatccttctttgcatatacattgaagcttgctcagttgccacaattccaac |
20378471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 19188422 - 19188715
Alignment:
| Q |
13 |
catcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttat |
112 |
Q |
| |
|
||||| ||||||||||| |||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19188422 |
catcagcttctttaccgctcactatatccaaaagccaattacacatttcaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttat |
19188521 |
T |
|
| Q |
113 |
caaatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| |||||||||||| || |||||||||||||||||||| |
|
|
| T |
19188522 |
caaatttatcaacccattgcagtttgttaccttcaaataggtcatgtaactaaaggtagcagaggatggaaccaactttatcagactggaacactgataa |
19188621 |
T |
|
| Q |
213 |
acataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaact |
306 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| || | || ||||||||| |||||| ||| ||||||| ||| | |||||||| ||||| |
|
|
| T |
19188622 |
acccaaatgctttcaagaaaatgtagaactgggtcaatctaaactccttctttgcatatacattgaagcttggccaggttccataatttcaact |
19188715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 13518069 - 13517791
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13518069 |
tcatcttctttactgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
13517970 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||| |||||| ||||||| ||||||||||| || |
|
|
| T |
13517969 |
aatttttcaacccattgcagtttgttacctccaaataggtcaaataactaaaggtaacagaggatggaactaacattatcagactagaacactgatacac |
13517870 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgc |
293 |
Q |
| |
|
| || |||||||| | ||||||||| |||| || |||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
13517869 |
aattatactttcaagcatctgtagaacggggtttatctgaaatccttctttgcatatacatttaagcttatgcagctgc |
13517791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 20509792 - 20510049
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20509792 |
tcatcttctttaccgttcactatatcctcaagacaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
20509891 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| |||||||||| |||||||| |||| ||||| |||||| ||| |||||| |||||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
20509892 |
aatttttcaacccattacagtttgtaacctccaaataggtcatgtaattaaaggtaacagatgatggaactaacattatcagactggaacactgataaac |
20509991 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatata |
272 |
Q |
| |
|
|||||||||||||||| ||||||||||| || || |||| ||||||||| |||||| |
|
|
| T |
20509992 |
ccaaatgctttcaagaaaatgtagaactggatcaatctgaactccttctttgcatata |
20510049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 16458429 - 16458744
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16458429 |
tcatcttctttaccattcactatatcctcaagcaaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtatgttatca |
16458528 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||| ||| |||||| |||||| |||||||||||| || | |||||||||||||||| ||| |
|
|
| T |
16458529 |
aatttatcaacccattgcagtttgccacctccaaataggtcaggtaagtaaaggtaacagatgatggaaccaactttattagactggaacactgatgaac |
16458628 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
| |||| |||||| ||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| ||||||||||| |||| | |||| |
|
|
| T |
16458629 |
aataatgatttcaataaaatgtagaatggggtccattttaaacccttctttgcatatatattgaagcttgtgcaactgccataatttcaacagtttgagt |
16458728 |
T |
|
| Q |
315 |
cccgggctaaattgag |
330 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
16458729 |
cgcgggctaatttgag |
16458744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 16448853 - 16449141
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16448853 |
tcatcttctttaccattcactatatcctcaagcaaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtatgttatca |
16448952 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||| ||||| ||| |||||| |||||| |||||||||||| || | ||||||||||| |||| ||| |
|
|
| T |
16448953 |
aatttatcaacccattgcagcttgtcacctccaaataggtcaggtaagtaaaggtaacagatgatggaaccaactttattagactggaacagtgattaac |
16449052 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattcca |
303 |
Q |
| |
|
|| ||||||||||| ||| ||||||| |||||||||| ||| |||||||| |||||||||| |||| |||||| ||||| ||| |||| |
|
|
| T |
16449053 |
attaatgctttcaataaaatgtagaatggggtccattttaaacccttctttgcatatatattgaagcctgtgcaactgccctaactcca |
16449141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 16484478 - 16484776
Alignment:
| Q |
21 |
tctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaaattta |
120 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
16484478 |
tcttcaccgttcactatatcctcaagcaaattacacattttaatcttcattgttgtgagtttgacaagactctttgctgttgagtatgttatcaaattca |
16484577 |
T |
|
| Q |
121 |
tcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaacataaat |
220 |
Q |
| |
|
|||| |||||||||| ||| |||| |||| |||| ||| ||| || ||||||||||||||| ||||| ||||||| || | ||||| || |
|
|
| T |
16484578 |
tcaatccattgcagtgtgtcacctctaaataggtc----------aggtaactgacgatggaaccaacattatcagattggaacaatgctcaacatttat |
16484667 |
T |
|
| Q |
221 |
gctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagccccggg |
320 |
Q |
| |
|
|||||||| ||| || |||| |||||||||| |||| ||||||| |||||||||| |||||||| ||| ||| |||| |||||||||||| |||| |
|
|
| T |
16484668 |
gctttcaataaaatgaagaatggggtccattt-aaattcttctttgcatatatattgaagcttgtccagatgcgctaatgtcaactctctgagttgcggg |
16484766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 22272777 - 22273092
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22272777 |
tcatcttctttaccattcactatatcctcaagccaattacacattttaatcttcattgttatgagtttgacaagactctttgctgttgagtgtgttatca |
22272876 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22272877 |
aattattcaacccattgcagtttgttacctccaaaaaggtcatataacaaaaggtaacagaagatggaaccaacattgtcagactggaacactgataaac |
22272976 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||| ||| |||| ||||| ||||| | |||| |
|
|
| T |
22272977 |
ataaatgctttcaagaaactgtagaactggatccatttgaaatccttctttgcatatacattgaagcttgctcaggtgccgtaatttcaactgtttgagt |
22273076 |
T |
|
| Q |
315 |
cccgggctaaattgag |
330 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
22273077 |
cgcgggctaatttgag |
22273092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 21817743 - 21817391
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21817743 |
tcatcttctttaccgttcacaatatcctcaagccaattacacatttgaatcttcattgttctgagtttgacaagactctttgctgttgagtgtgttatca |
21817644 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||| || |||||||||||| || ||||| ||||| |||||| |||||||||| ||| || || ||||||||| || ||||||||||||| || ||||| |
|
|
| T |
21817643 |
aatttttcgacccattgcagtatgatacctccaaataggtcatgtaactaaaggtaaccgaggacggaaccaactttatcagactggaacattggtaaac |
21817544 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||| ||||||||||| || |||| || |||||||||||||||||||| ||||||||| |||||| ||| | |||||||| ||||||||| || |
|
|
| T |
21817543 |
atcaattctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatcgaagcttagccaggtaccataatttcaactctctaagt |
21817444 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaagta |
367 |
Q |
| |
|
| |||||||| ||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21817443 |
cgcgggctaatttgagttgtactctcaacacttgtaagtacctcctgcaagta |
21817391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 121428 - 121077
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
121428 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgttgttgagtgtgtcatca |
121329 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||| |||||||||| |||||| |||||||||||| || ||||||||||||| | ||||| |
|
|
| T |
121328 |
aatttatcaacccattgcagtatgataccttcaaataggtcatgtaactaaaggtaacagaggatggaaccaactttatcagactggaacatcggtaaac |
121229 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaactctctgagc |
314 |
Q |
| |
|
|| ||| ||||||||||| || |||| || |||||||||||||||||||| ||||||||| |||||| ||| | |||||||| ||||||||||| |
|
|
| T |
121228 |
atcaattctttcaagaaaatgcagaaaaggatccatttgaaatccttctttgcatatatatcgaagcttagccaggtaccataatttcaactctctga-t |
121130 |
T |
|
| Q |
315 |
cccgggctaaattgaggtgtactcgcaacacttgtaagtacctcctgcaagta |
367 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
121129 |
cgcgggctaaattgaggtgtactctcaacacttgtaagtacctcctgcaagta |
121077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 49063 - 48773
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
49063 |
tcatcttctttaccgttcactatatcctcaagtcaattacacattttaatcttcattgttgtgagtttgacaagactcgtggctgttgagtgtgttatca |
48964 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
48963 |
aatttatcaacccattgcagtttgttacctccaaataggtcaaataactaaagctaacagaggatggaaccaactttgtcagactggaacactgagaaac |
48864 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaac |
305 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
48863 |
atcaatgctttcaagaaactgtagaacggggtccatctgaaatccttctttgcatatacattgaagcttgctcagttgccacaattccaac |
48773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 43466 - 43184
Alignment:
| Q |
17 |
atcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaaa |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| ||| |
|
|
| T |
43466 |
atcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactcttcgctgttgaatgtgatattaaa |
43367 |
T |
|
| Q |
117 |
tttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaacat |
216 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| |||||| |||||||||| || || |||||||||||| || ||| ||||||||| ||| | ||| |
|
|
| T |
43366 |
ttgatcaacccattgcagtatgttaccttcaaataggtcatgtaactaaaggtgactgaggatggaaccaactttatcatactggaacattgagacacac |
43267 |
T |
|
| Q |
217 |
aaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataat |
299 |
Q |
| |
|
||||| ||||||| || |||||||||||||| || |||||||||||||| |||||| ||| ||||||| ||| ||||||||| |
|
|
| T |
43266 |
aaatggtttcaagtaattgtagaactgggtcgatctgaaatccttctttgcatatacattgaagcttggtcaggtgccataat |
43184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 38051741 - 38051991
Alignment:
| Q |
21 |
tctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaaattta |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38051741 |
tctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttggcaagactctttgctgttgagtgtgttatcaaattta |
38051840 |
T |
|
| Q |
121 |
tcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaacataaat |
220 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| ||||| |||||||||| ||| || | ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38051841 |
tcaacccatggcaatttgttacctccaaataggtcacgtaactaaaggtaactgagggtggaaccaaatttgtcagactggaacactgataaacataaat |
38051940 |
T |
|
| Q |
221 |
gctttcaagaaactgtagaactgggtccatttgaaatccttctttacatat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38051941 |
gctttcaagaaactgtagaactgggtccatttgaaaaccttctttgcatat |
38051991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 38053955 - 38054245
Alignment:
| Q |
16 |
catcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
38053955 |
catcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgataaagctctttgctgttgagtgtgttatcaa |
38054054 |
T |
|
| Q |
116 |
atttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac- |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||| ||||| |||| |||||| |||||||||||| |||||||||||||||||| | |||| |
|
|
| T |
38054055 |
atttttcaacccattgcagtttgttacctctaaataggtcatgtaactgaaggtaacagaggatggaaccaactttgtcagactggaacacttagaaaca |
38054154 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataattccaact |
306 |
Q |
| |
|
|| ||| ||||||||||| |||| ||| |||||||| |||||||||||||| |||||| ||| ||||||| ||| |||||||| ||||||| |
|
|
| T |
38054155 |
attaat-ctttcaagaaaatgtaaaacggggtccatctgaaatccttctttgcatatacattgaagcttgctcaggtgccataagtccaact |
38054245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 30701815 - 30702081
Alignment:
| Q |
18 |
tcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatcaaat |
117 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
30701815 |
tcttctttactgttcactacatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactctttgccgttgggtgtgttatcaatt |
30701914 |
T |
|
| Q |
118 |
ttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaacata |
217 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||| |||||| |||| ||||| |||| | || ||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
30701915 |
ttttcaactcattgcagtttgttacctccaaataggtcatgtaacaaaaggcaacaaaggacggaaccaactttattagactggaacactgagaaacagt |
30702014 |
T |
|
| Q |
218 |
aatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttg |
284 |
Q |
| |
|
|| |||||||||||| ||||| ||||| ||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
30702015 |
tattttttcaagaaactctagaatggggtctatttgaaatccttctttgcatatacattgaagcttg |
30702081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 31595 - 31879
Alignment:
| Q |
15 |
tcatcttctttaccgttcacaatatcctcaagccaattacacattttaatcgtcattgttgtgagtttgacaagactctttgctgttgagtgtgttatca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| | |
|
|
| T |
31595 |
tcatcttctttaccgttcactatatcctcaagccaattacacattttaatcttcattgttgtgagtttgacaagactcttcgctgttgaatgtgatatta |
31694 |
T |
|
| Q |
115 |
aatttatcaacccattgcagtttgttaccttcaaatcggtcatataactaaaggaaacagaagatggaaccaacattgtcagactggaacactgataaac |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||||||| || || |||||||||||| || ||| ||||||||| ||||| || |
|
|
| T |
31695 |
aattgatcaacccattgcagtttgttacctccaaatcggtcatgtaactaaaggtgactgaggatggaaccaactttatcatactggaacattgatacac |
31794 |
T |
|
| Q |
215 |
ataaatgctttcaagaaactgtagaactgggtccatttgaaatccttctttacatatatatttaagcttgtgcagctgccataat |
299 |
Q |
| |
|
| ||||| ||||||| || ||||||||||||||||| |||||||||||||| |||||| ||| ||||||| ||| ||||||||| |
|
|
| T |
31795 |
acaaatggtttcaagtaattgtagaactgggtccatctgaaatccttctttgcatatacattgaagcttggtcaggtgccataat |
31879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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