View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_high_11 (Length: 351)
Name: NF21072_high_11
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 49521791 - 49521443
Alignment:
| Q |
3 |
taggagaaatgctcaagaaaaaagccaatgaaggtgttaatgttcttgtgcttgtttgggatgacagaacctctgttccggcttttaagaaagacggttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521791 |
taggagaaatgctcaagaaaaaagccaacgaaggtgttaatgttcttgtgcttgtttgggatgacagaacctctgttccggcttttaagaaagacggttt |
49521692 |
T |
|
| Q |
103 |
gatgggaacacatgaccaagaaactgcagagtattttaaaaacacaaaggtacattgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagtt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521691 |
gatgggaacacatgaccaagaaactgcagagtattttaagaacacaaaggtacattgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagtt |
49521592 |
T |
|
| Q |
203 |
caaggttttgaaacttcaactatgttcactcatcaccaaaagactatagttgttgatggccatcatgttgaagcatcgcagaagcgaacagttatcagtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521591 |
caaggttttgaaacttcaactatgttcactcatcaccaaaagactatagttgttgatggccatcatgttgaagcatcgcagaagcgaacagttatcagtt |
49521492 |
T |
|
| Q |
303 |
tcataggcggtattgatctttgcggtggaagatatgatacaatggaaca |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49521491 |
tcataggcggtattgatctttgcgatggaagatatgatacaatggaaca |
49521443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 49510833 - 49510592
Alignment:
| Q |
17 |
aagaaaaaagccaatgaaggtgttaatgttcttgtgcttgtttgggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatg |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||| || ||||||| ||| |||| |
|
|
| T |
49510833 |
aagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatg |
49510734 |
T |
|
| Q |
117 |
accaagaaactgcagagtattttaaaaacacaaaggtacattgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaac |
216 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||| || ||||||||||| || |||||||| |||| || ||||| ||| ||||||||||||||||||| |
|
|
| T |
49510733 |
atcaagaaacagcagagtattttagaaacacaaatgtccattgtgttttgtgcccgcgtaaacctggtgatggaagaagtatagttcaaggttttgaaat |
49510634 |
T |
|
| Q |
217 |
ttcaactatgttcactcatcaccaaaagactatagttgttga |
258 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
49510633 |
tttaactatgttcactcatcaccagaagactataattgttga |
49510592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University