View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_high_15 (Length: 294)
Name: NF21072_high_15
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 16371535 - 16371399
Alignment:
| Q |
77 |
tatagggcattatacttttcatattgaagtgaatttggcattgtcgcccaaaactaaaattaaatggacttttagacctttaa-tttagtttttaccttc |
175 |
Q |
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| T |
16371535 |
tatagggcattatacttctcatattgaagtgaatttggcattgtcgcccaaaacaaaaattaaatggac-tttagacctttaattttagtttttaccttc |
16371437 |
T |
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| Q |
176 |
aagccggcttcgagtttatagtaaaattttgtctaatt |
213 |
Q |
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| T |
16371436 |
aagccggcttcgagtttatagtaaaattttgtctaatt |
16371399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 16371640 - 16371564
Alignment:
| Q |
3 |
cgagtgagatgaaaaggaagttataaaatgtctatcaaatatcctttatttgctattattttttaattattgtttata |
80 |
Q |
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| T |
16371640 |
cgagtgatatgaaaaggaagttataaaatgtctatcaaatatcc-ttatttgctattattttttaattattgtttata |
16371564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 16371349 - 16371314
Alignment:
| Q |
244 |
acacaatctgcataaaaaattaattaattaaccagc |
279 |
Q |
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| T |
16371349 |
acacaatctacataaaaaattaattaattaaccagc |
16371314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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